Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27810 177 / 1e-52 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 171 / 2e-50 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 164 / 6e-48 MYB ATMYB57 myb domain protein 57 (.1) AT2G47190 164 / 4e-47 MYB AtMYB2 myb domain protein 2 (.1) AT1G68320 159 / 5e-45 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 157 / 2e-44 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G48000 154 / 1e-43 MYB ATMYB112 myb domain protein 112 (.1) AT4G13480 146 / 1e-40 MYB ATMYB79 myb domain protein 79 (.1) AT3G24310 145 / 5e-40 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT3G06490 146 / 7e-40 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022259 [exp] 305 / 6e-102 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10022256 [exp] 186 / 3e-54 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10014557 [exp] 179 / 2e-53 AT5G40350 224 / 1e-74 myb domain protein 24 (.1) Lus10032129 [exp] 177 / 5e-53 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10013084 [exp] 181 / 2e-52 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10037818 [exp] 164 / 2e-46 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 160 / 1e-45 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10041435 [exp] 161 / 4e-45 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10038062 [exp] 158 / 7e-45 AT2G47190 226 / 1e-73 myb domain protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346600 [exp] 182 / 7e-55 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.017G071500 [exp] 176 / 1e-52 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.015G046200 [exp] 167 / 2e-47 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G101400 [exp] 166 / 3e-47 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 166 / 4e-47 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.012G055600 [exp] 164 / 2e-46 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.008G122100 [exp] 163 / 2e-46 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 153 / 1e-42 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.004G115600 [exp] 143 / 5e-40 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.008G173400 [exp] 144 / 1e-39 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013081 pacid=23149283 polypeptide=Lus10013081 locus=Lus10013081.g ID=Lus10013081.BGIv1.0 annot-version=v1.0 ATGCTAAGTCACCCTTTTTTTGTAGTGTGGCTGGAGAGCCAAGGGCGTGATGGTGTACCACATGGTCGTGGCAAGAAGGAAGATCACGAGCACGCCATGA AGGTGTGCCACAAGCGTAATGAGACATGCCATGGGAGTACATTGGTGGAACTGCCATTAAGAATACTCTTCAAGGCAACGACATCTTTTAGAAGTCGAAT CGCTAACGCACTGTTAAAACCACAAAAGTTTGATGAAGTGAGTTCAGTCTTTTCTTCTTCTTCTTCTTCTTCAGCCAACAAACCCCCTGTCCATGATATT CCTGTACTTCTACCACCACCACCACCTTATTTTCCATCAAAGATTAATCCCATACGAGATCTTAAAAGAGGATTCCCATCATCCTCACCAACTAAGCACC ACCACCATCATTATCACTTTCATTGTCATCACAATACTGGTCATCTCAGTCCTAAAAATGATGTGAACAGTGAGATCCATCTATTACTAACTGGTGATTC TGGTAATAACAATAATTATTATCGGGATAACAACGATCTCAACTTACTTGCAGGTGGAGTTAGGTCTTCCCAGGAGCAAGATGACAAGGGTAAGAAGATC GAAAATGATGATAAAATACCGGGGTTAACGTTTCCAAATCCTACGAGTCGTGGCAAAGAATTACTAACTGTTGATAAAAAGGCTCAACAAATTCCTATCA AGGCACCTGCTGTAGTAGAAAAGATGAAGAAAAACACAGAACCAAATCTAGAAAAGCCACTTATCATTAAAGGTCAATGGACTCCTAAAGAAGACAAATT GCTGATTCAATTGGTGGGTGTGCATGGACTGAAGAAGTGGTCTGTAATTGGGCTGAAGAGAACGGGGAAGAGTTGCAGGCTGAGGTGGTTGAACTACTTG CGTCCAGACGTCCGGCGAGGCAACATTACTCCTGAGGAACAGCTCCTCATCATGGACCTTCATTCCAAATGGGGTAACAGGTGGTCCAAGATAGCAAAGC ATCTGCCTGGAAGGACGGACAACGAGATAAAGAACTATTGGCGAACGAGGATCCATAAACACCTCAAGCAAGCCGATCACCACAATCAGCAGCAGCAAAT GTTTCCCTCTGGTCATCTGGGTATCGGGTTGGACCAGATAATGAACATGAGTCGCGAGACATCCGCTAGCAACAACAACAACAACACCAGCCAAGTCTCG GCCGACACAATGGAGATGGATTACTCCCCTCCTGCATCTCATCATCATTACAACCACCACCACCACCTTGATGCAGGTTTCCATAGAGCTTCGGCCGGGC CCACCAACAACATTGCGGCTTCTGGGTCGTCGAGTAACATGCCTCCACCTCCTCCTCCTCCCGAGTCTGCGGAAGGTTACAGCTGGAGCATAGAGGAGCT CTGGTCTATGCAGCTCCTGAATGGAGATCAATAA
AA sequence Show only first row Show all	>Lus10013081 pacid=23149283 polypeptide=Lus10013081 locus=Lus10013081.g ID=Lus10013081.BGIv1.0 annot-version=v1.0 MLSHPFFVVWLESQGRDGVPHGRGKKEDHEHAMKVCHKRNETCHGSTLVELPLRILFKATTSFRSRIANALLKPQKFDEVSSVFSSSSSSSANKPPVHDI PVLLPPPPPYFPSKINPIRDLKRGFPSSSPTKHHHHHYHFHCHHNTGHLSPKNDVNSEIHLLLTGDSGNNNNYYRDNNDLNLLAGGVRSSQEQDDKGKKI ENDDKIPGLTFPNPTSRGKELLTVDKKAQQIPIKAPAVVEKMKKNTEPNLEKPLIIKGQWTPKEDKLLIQLVGVHGLKKWSVIGLKRTGKSCRLRWLNYL RPDVRRGNITPEEQLLIMDLHSKWGNRWSKIAKHLPGRTDNEIKNYWRTRIHKHLKQADHHNQQQQMFPSGHLGIGLDQIMNMSRETSASNNNNNTSQVS ADTMEMDYSPPASHHHYNHHHHLDAGFHRASAGPTNNIAASGSSSNMPPPPPPPESAEGYSWSIEELWSMQLLNGDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	0	1
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	3.7	0.8695
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10037651 [exp]	7.9	0.7870
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	9.5	0.8269
					Lus10017380 [exp]	12.2	0.7441
AT4G12140			RING/U-box superfamily protein...		Lus10007628 [exp]	15.5	0.7665
					Lus10030151 [exp]	20.2	0.7989
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	23.7	0.8093
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	26.5	0.7908
					Lus10025402 [exp]	26.7	0.7968
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	30.9	0.7685

Compare expression of checked genes

Lus10013081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.