Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01550 415 / 3e-144 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 407 / 9e-141 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT5G17630 244 / 9e-77 Nucleotide/sugar transporter family protein (.1) AT1G61800 218 / 2e-67 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 218 / 3e-67 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 198 / 3e-59 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT4G03950 106 / 3e-26 Nucleotide/sugar transporter family protein (.1) AT1G21870 102 / 4e-24 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 99 / 7e-23 EamA-like transporter family protein (.1) AT5G05820 96 / 6e-22 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042110 [exp] 436 / 4e-152 AT5G33320 528 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10022257 [exp] 397 / 1e-138 AT3G01550 264 / 1e-87 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10002385 [exp] 384 / 2e-131 AT5G33320 485 / 2e-171 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10004312 [exp] 224 / 3e-69 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10019209 [exp] 221 / 3e-68 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10011155 [exp] 221 / 4e-68 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10007653 [exp] 220 / 5e-68 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10018356 [exp] 219 / 9e-68 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10043060 [exp] 217 / 2e-66 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347300 [exp] 471 / 6e-166 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 428 / 7e-149 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 426 / 6e-148 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.013G071900 [exp] 236 / 2e-73 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G420200 [exp] 220 / 8e-68 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 217 / 1e-66 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 214 / 7e-66 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G057800 [exp] 204 / 2e-61 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 202 / 8e-61 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 190 / 2e-57 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10013083 pacid=23149298 polypeptide=Lus10013083 locus=Lus10013083.g ID=Lus10013083.BGIv1.0 annot-version=v1.0 ATGCAGGAAATAGTAGTCTCAGCTCCGCCTCTTTCTGTTTCAGCCCTGTCCCTCTTCAAACCACCGAAACAGCCACCATATACAACTTTCAGATTGAGTT CGTTGAACCAAATAAAGCCCACCACTCCTTTTCAACAAGTTCCACCATTTAATACACCCAGAAAGCTGTTTCTAGTTCCTGGAAACGGCAGTTCCACCAA GACCAGAGGTACCGGATCATTTTCTGGAAGTTCGGCTGAGAATGAAGGTGAGAAATCAAGTTCTGGCCAGCTGACTCGGACCCTAATACTAGGAACAATG TTTGGAGTTTGGTACATTCTCAACATCTGCTTCAACATTTACAACAAGCAGGTTCTGAAGGTGTATCCATTTCCAGTAACAGTAACTTCCTTCCAATTTG GATGTGGGTCTTTGGTGGTTGTTACTATGTGGGCGCTAAAACTCCATCCCATACCTAAACTCACCTCTTCTCAGCTTGCAGCAATAATCCCACTGGCTCT GGCACACACAATGGGCAATCTTCTGACCAACGTTAGTATTGGGAAAGTTGCTGTTTCCTTCACCCACACTGTCAAAGCCATGGAACCGTTTTTCACAGTC ATCTTCGCTTCTCTTTTCCTTGGCGAGAAACCCACAATTTGGGTGTTCTCTTCACTTGTGCCAATAGTGGGAGGAGTGGCGTTGGCATCTTTAACTGAGG CTTCCTTCAATTGGTCTGGTTTTTGCAGTGCCATGGCTTCGAATGTGACCAACCAATCAAGGAACGTACTGAGCAAAAAGCTAATGGTTAAGGAAGAAGA AACTCTGGACAACATCAATCTCTTCTCTGTTATAACCGTCATCTCATTTCTGGTGCTACTCCCGTCTGCAATCTCCATCGAAGGGATCAAGTTCACGCCT TCATATTTCAAGGCTGCAGCTAGTGAAGGCTTGAATGTAAGACAGCTATGTTTCAGATCTCTCATTGCTGGCTTCTGTCTCCATATGTACCAACAAGTAT CATACATGATACTGGGAATGGTGAATCCAGTGAGTCATGCAGTAGGGAACTGTGTGAAGAGGGTGGTGGTGATTGTCTCTTCCATTATCTTCTTCAACAC TCCGGTCTCTCCAATCAACTCTCTTGGAACTGGAATGGCGCTTGTGGGAGTGTGGTTGTACTCCAGAGCAAAGAGGGTGAAACCAAACCCTAAGTCTGCA TGA
AA sequence Show only first row Show all	>Lus10013083 pacid=23149298 polypeptide=Lus10013083 locus=Lus10013083.g ID=Lus10013083.BGIv1.0 annot-version=v1.0 MQEIVVSAPPLSVSALSLFKPPKQPPYTTFRLSSLNQIKPTTPFQQVPPFNTPRKLFLVPGNGSSTKTRGTGSFSGSSAENEGEKSSSGQLTRTLILGTM FGVWYILNICFNIYNKQVLKVYPFPVTVTSFQFGCGSLVVVTMWALKLHPIPKLTSSQLAAIIPLALAHTMGNLLTNVSIGKVAVSFTHTVKAMEPFFTV IFASLFLGEKPTIWVFSSLVPIVGGVALASLTEASFNWSGFCSAMASNVTNQSRNVLSKKLMVKEEETLDNINLFSVITVISFLVLLPSAISIEGIKFTP SYFKAAASEGLNVRQLCFRSLIAGFCLHMYQQVSYMILGMVNPVSHAVGNCVKRVVVIVSSIIFFNTPVSPINSLGTGMALVGVWLYSRAKRVKPNPKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	0	1
AT5G16030			unknown protein		Lus10033537 [exp]	1.7	0.9403
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	2.8	0.9463
AT3G06670			binding (.1.2)		Lus10021547 [exp]	3.3	0.9466
AT1G52670			Single hybrid motif superfamil...		Lus10011480 [exp]	4.2	0.9153
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	8.5	0.9208
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	9.4	0.9322
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	13.6	0.8929
AT2G04360			unknown protein		Lus10000124 [exp]	14.2	0.8340
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	15.0	0.8771
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	17.9	0.8955

Compare expression of checked genes

Lus10013083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.