Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30620 651 / 0 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 625 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 590 / 0 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 406 / 3e-143 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G10960 228 / 7e-72 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G64440 228 / 7e-72 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23920 220 / 9e-69 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 211 / 6e-65 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 204 / 2e-62 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G78570 91 / 1e-19 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003496 [exp] 793 / 0 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10038423 [exp] 691 / 0 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10023074 [exp] 225 / 4e-70 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 223 / 7e-70 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 217 / 2e-67 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 204 / 2e-62 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 204 / 4e-61 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10032394 [exp] 179 / 2e-53 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10038146 [exp] 96 / 2e-21 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459700 [exp] 690 / 0 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 681 / 0 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 602 / 0 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 599 / 0 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G090700 [exp] 228 / 1e-71 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 224 / 2e-70 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 218 / 1e-67 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.006G272700 [exp] 87 / 2e-18 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G214000 [exp] 80 / 3e-16 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G178500 [exp] 80 / 4e-16 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10013107 pacid=23149286 polypeptide=Lus10013107 locus=Lus10013107.g ID=Lus10013107.BGIv1.0 annot-version=v1.0 ATGCTAAATTTTGGAAGGACGAGGACGCAGTCTAGGTCCAATAGATCTGTGACTTTAGGAGGCATGGATTACCCAGATCCCAAAAGGAAGCGCAATTTTG TAGGAAAGATTGCTTTAGCGGCCATCTTGACGACTGTATGCATACTTGCGCTCAAGGGGTCCTCATTTAATCACACTACTCTGTTCTCTTTACGTGAACA AGGAGTAACTCACGTCTTGGTTACCGGTGGTGCTGGCTATATTGGTTCACATGCTACATTACGTCTTCTGAAAGATGGTTATAGGGTGACCATAGTGGAC AACCTTTCACGTGGCAATATAGGTGCAGTTAAAATCTTACAAGAAATGTTTCCAGAGCCTGGGCGGCTTCAGTTTATATATGCTGACTTGGGAGATGCTA AAGCTGTTAACAAAATATTTGCTGCGAATGCTTTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTAGGGGAAAGCACAATGTATCCTCTTAATAC ATGTGCAACATATGGAGAACCTGAAAAGATGCCTATAACTGAAGAAACACCACAGGTCCCCATTAATCCATATGGAAAAGCCAAAAAGATGGCTGAAGAC ATGATCCTTGATTTTTCCAAGACATCTGACATGGCAGTTATGATTTTGAGATACTTCAACGTGATTGGAGCAGATCCGGAAGGCAGATTAGGGGAGGCTC CCAGGCCGGAGCTGCGAGAGCATGGACGGATTTCTGGTGCCTGCTTTGATGCAGCTCGTGGTATAATGCCAGGGTTGAAGGTAAAAGGAACTGACTATAA GACACATGATGGTACCTGCATAAGAGATTACATTGATGTCACTGATCTTGTGGACGCTCATGTGAAGGCCCTGGAAAAGGCGGCACCTGGTAAAGTGGGA ATCTACAATGTTGGCACAGGGAAAGGTAGATCAGTGAATGAGTTTGTGGAAGCATGTAAGAAGGCAACTGGAGTAGAGATCAAGGTGGACTATCTACCTC GTCGACCTGGTGACTATGCTGAAGTGTACAGCGACCCATCTAAGATCAATTCTGAACTCAACTGGACGGCACGTTACACTGACCTGCAAGAGAGTTTGCA GATTGCGTGGAGATGGCAAAAGGCGCACCGAGAAGGATATGGAACCCCTTCAGTGATGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10013107 pacid=23149286 polypeptide=Lus10013107 locus=Lus10013107.g ID=Lus10013107.BGIv1.0 annot-version=v1.0 MLNFGRTRTQSRSNRSVTLGGMDYPDPKRKRNFVGKIALAAILTTVCILALKGSSFNHTTLFSLREQGVTHVLVTGGAGYIGSHATLRLLKDGYRVTIVD NLSRGNIGAVKILQEMFPEPGRLQFIYADLGDAKAVNKIFAANAFDAVMHFAAVAYVGESTMYPLNTCATYGEPEKMPITEETPQVPINPYGKAKKMAED MILDFSKTSDMAVMILRYFNVIGADPEGRLGEAPRPELREHGRISGACFDAARGIMPGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALEKAAPGKVG IYNVGTGKGRSVNEFVEACKKATGVEIKVDYLPRRPGDYAEVYSDPSKINSELNWTARYTDLQESLQIAWRWQKAHREGYGTPSVMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	0	1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	2.6	0.9682
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	4.0	0.9536
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	5.1	0.9638
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	6.2	0.9626
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	6.6	0.9625
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	8.9	0.9613
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	10.2	0.9506
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	11.0	0.9480
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	11.1	0.9376
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	13.6	0.9566

Compare expression of checked genes

Lus10013107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.