Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44500 188 / 3e-59 Small nuclear ribonucleoprotein family protein (.1.2) AT4G20440 187 / 7e-59 SMB small nuclear ribonucleoprotein associated protein B (.1.2.3.4) AT1G21190 42 / 5e-05 Small nuclear ribonucleoprotein family protein (.1) AT1G76860 42 / 5e-05 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038421 [exp] 223 / 2e-72 AT5G44500 263 / 2e-88 Small nuclear ribonucleoprotein family protein (.1.2) Lus10023386 [exp] 219 / 3e-71 AT5G44500 259 / 5e-87 Small nuclear ribonucleoprotein family protein (.1.2) Lus10003498 [exp] 87 / 1e-20 AT5G44500 81 / 1e-18 Small nuclear ribonucleoprotein family protein (.1.2) Lus10026326 [exp] 40 / 0.0002 AT1G76860 176 / 4e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10040487 [exp] 40 / 0.0002 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10011293 [exp] 40 / 0.0002 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10042341 [exp] 40 / 0.0004 AT1G76860 132 / 2e-41 Small nuclear ribonucleoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440100 [exp] 197 / 3e-62 AT4G20440 211 / 2e-67 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.011G155700 [exp] 196 / 9e-62 AT4G20440 218 / 2e-70 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.005G191600 [exp] 40 / 0.0001 AT1G76860 176 / 3e-59 Small nuclear ribonucleoprotein family protein (.1) Potri.002G068800 [exp] 40 / 0.0001 AT1G76860 175 / 1e-58 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10013108 pacid=23149299 polypeptide=Lus10013108 locus=Lus10013108.g ID=Lus10013108.BGIv1.0 annot-version=v1.0 ATGTCTATGTCGAAGAGTTCCAAGATGCTCCAGTACATCAACTACCGCATGCGGGTCACCATTCAGGACGCCCGGCAGCTGGTTGGCAAATTCATGGCCT TTGACCGCCATATGAACCTCGTCCTTGGCGACTGCGAGGAATTCCGCAAGCTCCCGCCGGCGAAAGGTAAGAAGAATAATGAGGAGCGGGAGGACCGCCG CACACTAGGTCTCGTCCTCCTCCGCGGCGAGGAAGTCGTGTCCATGACAGTCGAAGGTCCTCCTCCTCCTGACGAGTCTCGCGCTAGGTCGGTGGCCGCC ACTGCACTCTCCGGCCCGGGTATGGGTCGCGGCGCTGGTCGTGGGATTCCGACGGCTCCTCTGGTTCAAGCTCAACCTGGTCTCTCTGGACCTGTTCGAG GAGTCGGTGGCCCTGCTCCTGGAATGATGCAACCTCAAATATCTCGTCCTCCTGTCCCTAACATGTCTGCTCCTCCGATAAGCTATCCGGCTCCTGGAGC TCCACAACCCGGTGGTCCGCCCGTTATCCGGCCACCTGGACAGATGCCTCCTATGCAGTACCAAGGACAAGGACCGCCCATGGCCCGCGGTCCTCTACCA CAGGGAATGCCGCAATACGGTGCTAGGCCGCCACAGCAGGGGTATCCTATGCCTCCACAGTTCGCTCAGAGGCCGATGGGAGGGCCACCGCCACAGGGAC CGCCGATGATGAGAGGGAGAACTGGTCACAGTTCGCTCAGAGGCCGATGGGAGGGCCACTGCCGCAGGGACCGCCGATGA
AA sequence Show only first row Show all	>Lus10013108 pacid=23149299 polypeptide=Lus10013108 locus=Lus10013108.g ID=Lus10013108.BGIv1.0 annot-version=v1.0 MSMSKSSKMLQYINYRMRVTIQDARQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEVVSMTVEGPPPPDESRARSVAA TALSGPGMGRGAGRGIPTAPLVQAQPGLSGPVRGVGGPAPGMMQPQISRPPVPNMSAPPISYPAPGAPQPGGPPVIRPPGQMPPMQYQGQGPPMARGPLP QGMPQYGARPPQQGYPMPPQFAQRPMGGPPPQGPPMMRGRTGHSSLRGRWEGHCRRDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	0	1
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	1.0	0.9871
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	2.0	0.9808
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032321 [exp]	2.6	0.9659
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	3.0	0.9758
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	4.2	0.9664
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	4.4	0.9577
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	4.5	0.9669
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	5.7	0.9638
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	6.7	0.9652
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	6.9	0.9677

Compare expression of checked genes

Lus10013108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.