Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15460 867 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT4G32510 843 / 0 HCO3- transporter family (.1) AT1G74810 840 / 0 BOR5 HCO3- transporter family (.1) AT5G25430 840 / 0 HCO3- transporter family (.1) AT3G62270 731 / 0 HCO3- transporter family (.1) AT2G47160 728 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G06450 684 / 0 HCO3- transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008083 [exp] 1255 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 810 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10038060 [exp] 721 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10032651 [exp] 717 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10043299 [exp] 689 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10009995 [exp] 683 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 636 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031700 [exp] 939 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 935 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 919 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 916 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 884 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.008G100300 [exp] 738 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 729 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 719 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 707 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 697 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10013116 pacid=23164137 polypeptide=Lus10013116 locus=Lus10013116.g ID=Lus10013116.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTCAGTAGTCCGTTCAAAGGAATACTGAACGATTTGCGAGGGAGAGCGGCATGCTACAAGGACGATTGGACGAGTGCAATCCGCACCGGCG TCAGGATTCTGGCGCCGACGTGGTACATCTTCTTCGCTTCGGCTCTTCCCGTGATTGCGTTCGGCGAGCAATTGAATCGGGATACAGACGGCAGCCTGAG CACAGTGGAGACGCTGGCATCGACGGCGCTTGCCGGGCTGATTCATTCTATTTTGGGAGGGCAGCCGCTGTTGATATTAGGTGTAGCTGAGCCGACTGTC ATTATGTACACGTATCTGTACAGTTTCAGCAAGGATAGGCCGGAGATTGGCCGGAGTTTGTATCTAGCTTGGGCTGGATGGGTGTGTGTATGGACGGGGA TCATGCTGTGTGCGCTTGCGATTTTCAACGCCGGAAACATCATCAACAGATTCACCAGAGTCGCTGGGGAGATGTTTGGCATGTTGATTGCTGTTCTTTT CATTCAAGAGGCCATTAAGGGGTTGGTAAGTGAGTTCAGTATCCCAGAAGCTGATGATCCGAAATCGGAAGAGTTCCAGTTCCAATGGCTGTATGCAAAT GGCTTGCTTGCTGTTATTTTCGCACTCGGTGTACTCTGGACGTCTCTCAAGACAAGAGATGCTAGAGCTTGGAGATACGGCACAGGTGGATTTCGAAGTT TCCTAGCAGACTATGGTGTTCCCTTGATGGTTGTGTTATGGTCTGTGTTATCTTACGCGATACCACGTAAAGTTCCTCATGGAGTTCCAAGGAGGCTGTT CATCCCACTTCTTTGGGATTCACAGTCATTGCAACACTGGACAGTGATCAAGGATATGTTGAAGGTACCAGTAGGATACATCTTTGCTGCAATCGTACCA GCAGTTATGATAGCAGGATTGTACTTCTTTGATCACAGTGTAGCTTCACAGCTTACACAGCAGCCAGAGTTCAATCTCAAAAAGCCTTCCGCTTACCACT ATGACGTGTTTCTGCTAGGAATCATAACTTTGATTAGTGGATTGCTAGGTCTTCCTCCATCAAACGGAGTCCTTCCTCAATCGCCTATGCACACTAAGAG CCTTGCAGTTCTTAAGAAGCAGTTGATCCGAAAGAAGATGGTGAAAGGCGCCAAGGAAGTAATCGACCGAAAAGGAAGCTCGTCCGAAATCTATGGGAAG ATGCAAGATGTGTTCATAGAGATGGATCGATCACCAGCAGAAACTGCAACGGCGCACAGAGAACTGGAGGACTTGAAGAAAGCAGTGATGAGAAACGAAG ATGGTGGGAAGTCGAAAGGGAAGTTCGACCCGGAGAAATGCATTGACGCTCACCTGCCTGTGAGAGTTAACGAACAGAGGATGAGTAACTTGTTACAGTC GATCCTGGTGGGGATCTCAATGTGTGCTATACCGTTGATCAAAATGATGCCGACTTCAGTCCTGTGGGGTTACTTCGCCTACATGGCCATCGACAGCCTT CCAGGAAATCAGTTCTGGGAAAGACTGTTGATGCTCTTCGTCGCTCCCAGCCGTCGTCATAAGATTTTGGAAGGCTTCCACGCATCTTTCGTCGAATCGG TGCCGTTTAAGGACATAGTGATATTCACTCTGATGCAATTCGTCTACTTCCTGATGTGCTTCGGAATTACATGGATCCCGATTGCAGGAATACTCTTCCC TCTGCCTTTTTTCATCCTCATCCTCATAAGGCAACACCTCCTTCCCAAGTTCTTCCGGCCCTACCATCTCCAAGAACTCGACGCCGCCGAGTATGAAGAG ATCACCGGCGCACCAAAGAGAAGCATGGATTTGGATGCAGGAGAAGGAGAGTGCGAGGGACGCGACGACGACTTCTTCGATGCCGAGATACTCGACGACA TGACGACCCACCGAGGCGAGTTGAAGCATCGTTCTCGCAGCGTCAGGGATGATAGGCCATTCCAGGTGCATCCAGGAGGAGCAGGGGAAGGGGATAGCGG TGAAAGACAAGTGTGA
AA sequence Show only first row Show all	>Lus10013116 pacid=23164137 polypeptide=Lus10013116 locus=Lus10013116.g ID=Lus10013116.BGIv1.0 annot-version=v1.0 MESVSSPFKGILNDLRGRAACYKDDWTSAIRTGVRILAPTWYIFFASALPVIAFGEQLNRDTDGSLSTVETLASTALAGLIHSILGGQPLLILGVAEPTV IMYTYLYSFSKDRPEIGRSLYLAWAGWVCVWTGIMLCALAIFNAGNIINRFTRVAGEMFGMLIAVLFIQEAIKGLVSEFSIPEADDPKSEEFQFQWLYAN GLLAVIFALGVLWTSLKTRDARAWRYGTGGFRSFLADYGVPLMVVLWSVLSYAIPRKVPHGVPRRLFIPLLWDSQSLQHWTVIKDMLKVPVGYIFAAIVP AVMIAGLYFFDHSVASQLTQQPEFNLKKPSAYHYDVFLLGIITLISGLLGLPPSNGVLPQSPMHTKSLAVLKKQLIRKKMVKGAKEVIDRKGSSSEIYGK MQDVFIEMDRSPAETATAHRELEDLKKAVMRNEDGGKSKGKFDPEKCIDAHLPVRVNEQRMSNLLQSILVGISMCAIPLIKMMPTSVLWGYFAYMAIDSL PGNQFWERLLMLFVAPSRRHKILEGFHASFVESVPFKDIVIFTLMQFVYFLMCFGITWIPIAGILFPLPFFILILIRQHLLPKFFRPYHLQELDAAEYEE ITGAPKRSMDLDAGEGECEGRDDDFFDAEILDDMTTHRGELKHRSRSVRDDRPFQVHPGGAGEGDSGERQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	0	1
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	1.7	0.7753
					Lus10008321 [exp]	7.3	0.7958
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	10.5	0.7605
AT1G62935			unknown protein		Lus10009297 [exp]	12.3	0.7766
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	12.4	0.7348
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	20.5	0.7626
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10009924 [exp]	21.0	0.7336
					Lus10002237 [exp]	21.1	0.7423
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	23.8	0.7408
AT5G17680			disease resistance protein (TI...		Lus10028043 [exp]	24.2	0.7262

Compare expression of checked genes

Lus10013116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.