Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53910 216 / 5e-67 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT3G14230 179 / 1e-52 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT3G16770 107 / 6e-27 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G47520 96 / 3e-23 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 90 / 2e-20 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G43160 82 / 2e-18 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 83 / 3e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 82 / 7e-18 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G50080 82 / 9e-18 AP2_ERF ERF110 ethylene response factor 110 (.1) AT5G61890 82 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037448 [exp] 485 / 2e-172 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10003601 [exp] 100 / 1e-23 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 99 / 2e-23 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 91 / 1e-20 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10014054 [exp] 82 / 1e-17 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10037487 [exp] 79 / 1e-16 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10033664 [exp] 77 / 3e-16 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10022426 [exp] 79 / 5e-16 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10033938 [exp] 76 / 5e-15 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163700 [exp] 269 / 2e-87 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.003G071700 [exp] 268 / 4e-87 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.014G126100 [exp] 105 / 1e-25 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 104 / 4e-25 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 99 / 1e-23 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.008G210900 [exp] 89 / 3e-20 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.001G067600 [exp] 83 / 4e-18 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 82 / 6e-18 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.009G101900 [exp] 82 / 1e-17 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.005G195000 [exp] 82 / 5e-17 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10013186 pacid=23164165 polypeptide=Lus10013186 locus=Lus10013186.g ID=Lus10013186.BGIv1.0 annot-version=v1.0 ATGTGTGGCGGAGCTATCATCTCCGGGTTCATACCACCCACCACCGTCGCTGGACGATCCTCCAGGAGGCTCACCGCCGACTTCCTCTGGCCCGATCTCA AGTCAAAATCGGTCAGCAAGCCTTACTCCAAGCCTGCCGTCGTGGTAGATCTCGACGACGATTTCGAGGCTGATTTCCAGGAGTTCAAGGATGATTCCGA TGTCGACGTCGACGATGTTGATGACGTCTTGGCCGATGTCAAGCCCTTTGCCTTCTCTGCCCCTCCTCCTCCTCCTCGTTCTGCAGCTGTGAACTCAGTT GAATTCAGCGGTCAAGCTGAGAAATCCGCAAAGAGGAAGAGGAAAAACCAGTACAGAGGGATTCGACAGCGCCCATGGGGCAAGTGGGCTGCCGAGATTC GTGATCCAAGGAAAGGAGTTCGTGTCTGGCTTGGGACATTCAACACTGCAGAGGAAGCTGCTAGAGCCTATGATGCCGAGGCTCGTAGGATTCGTGGCAA GAAAGCCAAGGTGAACTTCCCTGATGCTGCTGCTCCTCTGCGTGCTGCGCCTGCTAAGCGAACCTCTGCAAAGGCTAAAGCTCAGAAACCATCGAAGATT CAGAACTTGGATAACAACAGTGAACAACAAGACTTGTTCGACTCCATGTGCTTCGTGGAAGAGAAACCATCGATGAACCAGCTTGCCATGATGGCGGACG CCACCTTGGCCTCGAATGCTGAAGTCAACAAGTCAGCTGTCCCGAGTGATGCACCTGTGTACTTCAGTTCGGACCAGGGAAGCAATTCGTTCGACTTTTC TGATTTCGGATGGACAGAACAGGTCCCCAAGACTCCCGAGATATCATCTGTCTTTCTGCCTGCTGCTCCCGAGTTCAACGAATCAGGGTTCGTCGACGAG GATGCCAATCCTAGCAAGAAGCAAAAATGCAGCTCTGATAATACTGAGGAGGAGCTGTTCGGGTTCGACAAGTTGCTTCAGATGCCGTATATGGACGGTG GATGGGAGGCTTCCCTTGATAACCTACTCAACGGAGACTCAACTCAGAACTGTGGGAACGGCTCAATGGAGGATCTGTGGAGCTTTGACAACCTCTCCAG CATGGTTGGGGGAGGAGGCTACTGA
AA sequence Show only first row Show all	>Lus10013186 pacid=23164165 polypeptide=Lus10013186 locus=Lus10013186.g ID=Lus10013186.BGIv1.0 annot-version=v1.0 MCGGAIISGFIPPTTVAGRSSRRLTADFLWPDLKSKSVSKPYSKPAVVVDLDDDFEADFQEFKDDSDVDVDDVDDVLADVKPFAFSAPPPPPRSAAVNSV EFSGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDAAAPLRAAPAKRTSAKAKAQKPSKI QNLDNNSEQQDLFDSMCFVEEKPSMNQLAMMADATLASNAEVNKSAVPSDAPVYFSSDQGSNSFDFSDFGWTEQVPKTPEISSVFLPAAPEFNESGFVDE DANPSKKQKCSSDNTEEELFGFDKLLQMPYMDGGWEASLDNLLNGDSTQNCGNGSMEDLWSFDNLSSMVGGGGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	0	1
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	1.0	0.9558
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	2.0	0.9085
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	3.3	0.8467
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	3.5	0.8740
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	3.9	0.8792
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	4.5	0.8836
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	4.9	0.8682
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	6.0	0.8911
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	6.2	0.8423
AT1G75810			unknown protein		Lus10033134 [exp]	7.3	0.8562

Compare expression of checked genes

Lus10013186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.