Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70000 212 / 4e-68 MYB myb-like transcription factor family protein (.1.2) AT5G47390 165 / 1e-48 MYB myb-like transcription factor family protein (.1) AT3G16350 157 / 3e-45 MYB Homeodomain-like superfamily protein (.1) AT5G61620 138 / 2e-38 MYB myb-like transcription factor family protein (.1) AT1G74840 134 / 5e-38 MYB Homeodomain-like superfamily protein (.1.2) AT1G19000 133 / 5e-37 MYB Homeodomain-like superfamily protein (.1.2) AT5G56840 124 / 2e-34 MYB myb-like transcription factor family protein (.1) AT2G38090 113 / 3e-29 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G58900 111 / 7e-29 MYB Homeodomain-like transcriptional regulator (.1) AT1G49010 112 / 8e-29 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030813 [exp] 403 / 8e-143 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 218 / 4e-70 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 202 / 2e-64 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10040181 [exp] 164 / 3e-48 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 164 / 5e-48 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10037560 [exp] 162 / 5e-47 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 149 / 5e-42 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10036652 [exp] 142 / 3e-40 AT1G74840 176 / 4e-54 Homeodomain-like superfamily protein (.1.2) Lus10025822 [exp] 141 / 4e-39 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191800 [exp] 229 / 7e-74 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 224 / 3e-72 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.003G079500 [exp] 167 / 8e-50 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 166 / 6e-49 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 157 / 3e-45 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 155 / 8e-45 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.015G069000 [exp] 143 / 1e-40 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.006G230500 [exp] 134 / 4e-38 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 134 / 9e-37 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.012G073900 [exp] 131 / 6e-36 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013289 pacid=23166660 polypeptide=Lus10013289 locus=Lus10013289.g ID=Lus10013289.BGIv1.0 annot-version=v1.0 ATGTCTCGAATCTGTTCTCAGTGCGGAAACAACGGCCACAACTCCAGGACATGCGGCGGGGAGATGAGCTCTATTACTTCCGGCGACGCTACGGCGGCGG AGAACGGGATTATGCTGTTTGGGGTGAGACTCACTGCAGGGATGAACAACACTTTCCGGAAGAGCGCCAGTATGAACAACTTGTCGATGTACGCCGACCA TAGGAACCAGAATTCTGTCGCTGACGGCGTTGTTGTGGTGGCATCTGGCTACGAGTCCGACGACGTCGTCCACGCCTCCGGCAGAGGCCGCGAGCGGAAG CGAGGGGTGCCGTGGACGGAGGAGGAGCACAGGCTGTTTCTGGTGGGGCTGCAGAAAGTGGGGAAAGGAGATTGGAGGGGGATATCGAGGAACTTCGTGA AGACGAGGACGCCGACGCAAGTGGCAAGTCATGCTCAGAAGTACTTTCTCCGGCGGAATAATCAGAATCGGCGGCGTCGGAGGTCTAGTCTCTTTGACAT CACCACGGATAATACACCGCCACCAAACCAAGAAGCTGCCGCTGCAGCGCTGTTCAAGGTCAACAGCGTCCATCCATCCAAGTTCCCAGTCCCGACTTCT CCGGCGGCAACAATCACCGGCGAAAGGCTGATGCTAGGACAACCGACGGCGAGGACGAAAGTTGGTCGTCCGATCCCATTACCACCGTCTTCAAAAATGG CGAGTCTGAATCTGAACCAGAAACAGGAACCCTTTCTACCTCTGTCACTCAGGCTATCACCCACTCCTTCATCCGGCGAGAAGTCGTCGTCATCGTCGGC GGGGACAAGGTCGTCGTCGTCTGCTTTTCAGGGAATGTCTAGTGGCGACAGCATCATAAGCGTTGCGTGA
AA sequence Show only first row Show all	>Lus10013289 pacid=23166660 polypeptide=Lus10013289 locus=Lus10013289.g ID=Lus10013289.BGIv1.0 annot-version=v1.0 MSRICSQCGNNGHNSRTCGGEMSSITSGDATAAENGIMLFGVRLTAGMNNTFRKSASMNNLSMYADHRNQNSVADGVVVVASGYESDDVVHASGRGRERK RGVPWTEEEHRLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNQNRRRRRSSLFDITTDNTPPPNQEAAAAALFKVNSVHPSKFPVPTS PAATITGERLMLGQPTARTKVGRPIPLPPSSKMASLNLNQKQEPFLPLSLRLSPTPSSGEKSSSSSAGTRSSSSAFQGMSSGDSIISVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70000	MYB		myb-like transcription factor ...		Lus10013289 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Lus10030813 [exp]	2.0	0.8148
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	6.5	0.8322
AT3G02720			Class I glutamine amidotransfe...		Lus10031360 [exp]	9.6	0.8023
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	26.6	0.8125
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	28.2	0.7816
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	33.8	0.7857
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	35.4	0.7819
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	41.8	0.7709
AT3G01060			unknown protein		Lus10005219 [exp]	43.4	0.7607
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	44.7	0.7590

Compare expression of checked genes

Lus10013289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.