Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13420 845 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 638 / 0 Potassium transporter family protein (.1) AT2G35060 621 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT2G40540 611 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G31120 611 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT1G70300 588 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 588 / 0 Potassium transporter family protein (.1) AT2G30070 582 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G19960 578 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT4G33530 565 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027004 [exp] 773 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 756 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030857 [exp] 608 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 600 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 595 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10012993 [exp] 593 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 588 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10034215 [exp] 587 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10003402 [exp] 567 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G069650 [exp] 984 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 977 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069799 [exp] 972 / 0 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G132500 [exp] 781 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.010G094400 [exp] 653 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.010G094300 [exp] 599 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.001G123800 [exp] 590 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.013G083400 [exp] 590 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.019G056500 [exp] 590 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.003G109700 [exp] 586 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10013304 pacid=23151353 polypeptide=Lus10013304 locus=Lus10013304.g ID=Lus10013304.BGIv1.0 annot-version=v1.0 ATGGACAATTCGAAGCTGGCGAAGGAAATGTCGGCCGAAACCAGAAGCAAAAGGAGCAGCTGGAGGAAGCTCGAGGAAGAAGAAGATTCTGGCGAGATAC GAAACGACGACGGATTGGCTACCGATCATCTGCAGCAATTCCCGGCGATCACTCACAAGGAAAGGAAAGTTTCATGGGCTAAGCTCAGGAGGGTCGACTC TCTCAATTTGGAGGCTGGCTTGGTTTCCAAGACAACACAAGGCGGCGGAGGATCTCATCATTCGAGTCATCCTACTCGTGATCAGGGCTCATCCGCAGCG ACAAACTGGAGGCGAACCATAAGCTTCGCGTTCCAGAGCATTGGAGTGGTCTACGGCGACATCGGAACATCCCCACTCTACGTCTACAAGAGCACATTCA CTGACGGCATCAAAACCAACGAAGACATCCTAGGAGTCCTCTCCCTAATCATCTACACAATCCTCCTTGTCGCCCTGATCAAGTACGTGGCAATAGTCCT GTGGGCCAACGACAATGGAGATGGTGGGACCTTCGCACTCTACTCTTTACTCTGCCGTCACTTGAGAATCAGCCTGATCCCTAACCAGCAGCCCGAGGAC GCGCAGCTCTCTAACTACAACCTCGAGCTGCCTTCGCGACACCCCACGACGAGACTGGCTCACTATGTGAAGAGTAAGATGGAGACCAAGAGAGGGTTGC AGATATTGATGTTTTTTGTCACTATCTTGGGGACTTCCATGGTCATTGGGGATGGGATTCTCACTCCTAGCATTTCGGTTCTTTCTGCCGTTGAAGGGGT TTCGTCGTCTTTGGGAAAAGAAGCTGTGGTGGGAATATCGGTAGCGATACTGATAGTCCTGTTCTCGGTGCAACGTTTCGGTTCGGACAAGGTAGGGTTC TCGTTCGCGCCGATTATAATGATTTGGTTCGCGTTCATAGCCGGGATCGGAGCTTACAACTTGTTTAAGCATGATGTCACCGTTCTACGTGCCTTTAACC CAAAGTACATGGTGGATTACTTCACCAGAAATGGCAAAACTGCGTGGATCTCCTTGGGCGGGATCGTTCTCTGCATCACCGGTGCAGAAGCCATGTTCGC TGATTTGGGACACTTCAACGTTCGAGCTATCCAAATAAGTTTCGCTGGGTTGGTGTGTCCAGCGTTGACAATAGCGTATATTGGGCAAGCGGCTTACTTG TCCAAGTTTCCTGAGGATGTTCAAGATACCTTTTACAAGTCCATTCCCGGGCCGCTGTACTGGCCGACGTTCGTGGTGGCGGTGGCCGCGGCGATCATAG CTAGTCAGGCCATGATATCCGGCGCATTTGCTATAGTTTCACAGTCTCTAGCCCTGGGTTGTTTCCCAAGGGTGAAAGTAGTGCACACCTCGGCCAAATA CGAGGGTCAAGTGTACATCCCTGAGATCAACTACATGCTCATGATTGCTTGTGTACTCGTCACCGTTGCCTTCCAGACCACCGAACAGATCGGTCATGCC TACGGGATCGCGGTGGTGGCGGTGATGGTGATCACAACATGCATGATAAGCCTAATAATGCTACTAATATGGAAGACAAGACTCTACTTAATCCTCCTCT TCTTCACATCCTTCATGGCCTTGGAAATAGTCTACCTCTCAGCAGTGCTCTACAAGTTCAAACAAGGAGGCTACTTACCACTAGCATTCTCTTTGTTCCT AATGATGGTCATGGGAACATGGCACTACGTCCACAAACAGAGGTACATGTACGAGCTCCGCAACAAGGTCTCCGCGGAGTACATCCCTCAGTTGATGGCG GCTCGAAATGGCCGCGAAGCCGCCGTTTCAAGGGTTCCTGGGATGGCTTTCCTTTACTCGGAGCTCGTTCAAGGGATTCCTCCCATCTTCCCTCACTTTG TCGCCAATGTGCCTTCGGTCCATTCCGTGCTGGTGTTTGTTTCGTTGAAGAATCTTCCCATTAGTAAGGTTCTGCCTGAAGAGAGGTTCTTGTTCAGGCA GGTCGAGCCTCGCGAGTATCGCATGTTCCGCTGCGTCGTCAGGTATGGATACAAAGACGCAATCGAGGAGCCACACGTGTTCGAGCGCCAGTTGGTCGAA AATCTAAAAGAATTCATCCGTCACGAGCACTTTATGAATGAAGGAACCGCTCCTGCTCCTACGACCGCCGCCATTACTCCCGACAACACCGCCGAGGAGG CGGCAAAATTTCCGAACGGCGGGAGTAGCCGACACGTGTCATCAAGAAAATCATCTAGCAACTCAATCGGCCCGGTCAGCAACAACGACGAAAACATTGA CACCGTCGCTAATAATATTAGCATTATTAACAGTGGTAGTAGTGTTAATAAGTCTTCAAATGGGAACAAGGTGGCGGTTGTGGCTGCGGTGGGGCCGGCG GAGGAAGAGATGCAGTTCGTGCAGAAGGCGATGGAGCAGGGAGTCGTGTACCTCCTCGGAGAGGCGGAGGTTGTGGCCGAACCGAAGTCGTCGTTGCTGA AGAAGATGGTGGTTAATTATGGCTACAGTTTCTTGAGGAAGAATTTCAGGGGAGGTGAGAAGGGTTTGGCTGTCCCGCGTACTAGGCTTCTCCGAGTTGG TATGACTTACGAAATTTGA
AA sequence Show only first row Show all	>Lus10013304 pacid=23151353 polypeptide=Lus10013304 locus=Lus10013304.g ID=Lus10013304.BGIv1.0 annot-version=v1.0 MDNSKLAKEMSAETRSKRSSWRKLEEEEDSGEIRNDDGLATDHLQQFPAITHKERKVSWAKLRRVDSLNLEAGLVSKTTQGGGGSHHSSHPTRDQGSSAA TNWRRTISFAFQSIGVVYGDIGTSPLYVYKSTFTDGIKTNEDILGVLSLIIYTILLVALIKYVAIVLWANDNGDGGTFALYSLLCRHLRISLIPNQQPED AQLSNYNLELPSRHPTTRLAHYVKSKMETKRGLQILMFFVTILGTSMVIGDGILTPSISVLSAVEGVSSSLGKEAVVGISVAILIVLFSVQRFGSDKVGF SFAPIIMIWFAFIAGIGAYNLFKHDVTVLRAFNPKYMVDYFTRNGKTAWISLGGIVLCITGAEAMFADLGHFNVRAIQISFAGLVCPALTIAYIGQAAYL SKFPEDVQDTFYKSIPGPLYWPTFVVAVAAAIIASQAMISGAFAIVSQSLALGCFPRVKVVHTSAKYEGQVYIPEINYMLMIACVLVTVAFQTTEQIGHA YGIAVVAVMVITTCMISLIMLLIWKTRLYLILLFFTSFMALEIVYLSAVLYKFKQGGYLPLAFSLFLMMVMGTWHYVHKQRYMYELRNKVSAEYIPQLMA ARNGREAAVSRVPGMAFLYSELVQGIPPIFPHFVANVPSVHSVLVFVSLKNLPISKVLPEERFLFRQVEPREYRMFRCVVRYGYKDAIEEPHVFERQLVE NLKEFIRHEHFMNEGTAPAPTTAAITPDNTAEEAAKFPNGGSSRHVSSRKSSSNSIGPVSNNDENIDTVANNISIINSGSSVNKSSNGNKVAVVAAVGPA EEEMQFVQKAMEQGVVYLLGEAEVVAEPKSSLLKKMVVNYGYSFLRKNFRGGEKGLAVPRTRLLRVGMTYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10013304 [exp]	0	1
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	2.4	0.9194
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	2.8	0.9115
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	4.0	0.8869
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013137 [exp]	11.5	0.8812
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	15.0	0.8927
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018100 [exp]	16.5	0.8725
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	16.5	0.8915
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	16.7	0.8884
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	17.0	0.8868
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	17.3	0.8899

Compare expression of checked genes

Lus10013304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.