Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22010 1057 / 0 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G04730 105 / 1e-22 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21690 86 / 1e-17 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 80 / 9e-16 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G77620 77 / 4e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77470 66 / 7e-11 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G07270 54 / 4e-07 Cell division control, Cdc6 (.1) AT2G29680 49 / 1e-05 CDC6, ATCDC6 cell division control 6 (.1.2) AT2G02480 44 / 0.0006 STI STICHEL, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043134 [exp] 101 / 2e-21 AT1G04730 946 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028543 [exp] 83 / 1e-16 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10024504 [exp] 78 / 4e-15 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 77 / 9e-15 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10025689 [exp] 69 / 8e-12 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 66 / 4e-11 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10008450 [exp] 61 / 5e-11 AT5G22010 63 / 1e-12 replication factor C 1, replication factor C1 (.1) Lus10011627 [exp] 52 / 2e-06 AT2G29680 576 / 0.0 cell division control 6 (.1.2) Lus10009446 [exp] 49 / 2e-05 AT2G29680 584 / 0.0 cell division control 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213900 [exp] 1134 / 0 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.001G050300 [exp] 100 / 4e-21 AT1G04730 1058 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G123200 [exp] 80 / 1e-15 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.005G181300 [exp] 77 / 1e-14 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 69 / 7e-12 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.002G084700 [exp] 64 / 4e-10 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G177000 [exp] 56 / 2e-07 AT1G77620 642 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250200 [exp] 49 / 1e-05 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1) Potri.002G080100 [exp] 48 / 2e-05 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] PF08519 [flax] [poplar] RFC1 Replication factor RFC1 C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013372 pacid=23151355 polypeptide=Lus10013372 locus=Lus10013372.g ID=Lus10013372.BGIv1.0 annot-version=v1.0 ATGAAGCCACATGATAGCGGAAATGGCAGTACTAAAAAGCCAGCCACAACTACTGCTGACAATAAACCGAAACCGCCACCTCAATTGGAGCCAGAACCTG AACCTCCTGTGCCGGAGAGTGTAGGTAGAAGGAAAACTAGCAAGTACTTTGCAACGGATAAGCAGAAGCCGAAAGATGAAAAAGAGGCGGTGAAACCCCC AGCCAAGAGAAAGAGTCAGAGTGAGAGTAACCCACCTGTGAAAGCAACGCCTCCTAGAAAGGTTCAGAAAGTGGAAGATGATGATGACGGTGATGACTTT GTCATGTCAGCTAAAAAGAAGATCTCTGTTGATGCCACTCCTAGCAAGAAGTTGAAGAGTGGTTCTGGCAGGGGGATTAGTCAGAAGGGTGTCGTAAAAG ATGAGAGTGAGGAAGAAGAAGCTGAGGAAACTGAACCACCTCCTAAGGCTGCTGGGAGAGGTCGTGGCAGTAGAGGTGCAGCTGGGGCTTCAGCTGGTGG AAGGGGCAGAGGCGGAGGCCGTGGTGGATTCATGAACTTTGGTGAAAGGAAAGATCCTCCGCACAAAGGAGAAAAGGAAGTCCCAGAGGGTGCTCCTGAC TGCTTAGCTGGGTTGACATTTGTAATAAGTGGCACTCTTGATAGATCCTCTATGATCGTCTTCGTTTCCTTTCTGGTTCTCATGCTTGTCTTTTATGCCG TGAATTTTTTTCGGCCTTACAGTTTGGAAAGAGAAGAAGCAGAAGATTTGATTAAACGACATGGAGGTCGTATTACTGGATCTGTCAGCAAGAAAACGAG CTACCTTTTATGCGATGAGGATATTGAGGGGCGAAAATCTGCCAAAGCTAAAGAGCTTGGCACTGCTTTCCTTACCGAGGATGGTCTTTTTGATAAGATT CGCTCTTCAAAACCTGCAAAAGTGTCCCCAAAAGAAGTGCCTAAGGTCTCTGCGGAGAAAGTATCACTAGTGCCAAAAAAGAGTCCCCAAAAAGCAGAAG TTAAGGGGACCTCTTCAGTACAAGGTGCTACAAAAAAAGGTCCAGCCAAAGCTGTCACCCCTGTTAAGAGAAAGCAATCCATTGAGCCCTCCTCATTGCC ATGGACAGAAAAATATAGGCCTAAAGTTCCAAATGATCTTGTTGGGAATCAATCATTGGTTAACCAGCTTCATAATTGGTTAAAAAGCTGGAATGACCAG TTCCTTGGTGGCGGGAAAAAAGGAAAGGGTAAACAGAGCGATTCTGCTGCCAAGAAAGCAGTGTTACTAAGTGGAACACCAGGGATAGGGAAAACAACAT CTGCAAAGCTGGCGTGCCAGATGCTTGGTTTTCAAGCAGTAGAGGTCAATGCAAGTGACACACGAGGGAAGGCAGATTCCAAAATTTTCAAAGGAATTAG TGGCAGTAATGCAAATTCCATAAAGGAACTCATCAACAACGAATCTCTGAGTTCTAAAATGGACAGGCCAAAGCATCCAAAGACAGTTCTCATCATGGAT GAGGTAGATGGGATGTCTGCAGGAGATAGAGGTGGAGTTGCTGATCTTATAGCTAGCATAAAGATCTCAAAAATGCCTATTGTATGCATCTGTAATGATC GATACAGTCAGAAATTAAAGAGTCTTCTCAATTACTGCCTGGTTCTGACCTTCCGCAAACCTACAAAACAACAGATGGCAAAGAGGCTAATGCAAATCGC ATATGCTGAAGGACTCAAAGTTAATGAGATTGCACTTGAGGAACTTGCAGAAAGATCGAATGGGGACATGCGGATGGCCGTAAATCAATTGCAGTACATG AGTCTATCCATGTCGACAATTCAGTATGATGATGTGCGGAAGCGCCTTCTAAGCAGTGCAAAGGATGAAGATATTTCACCATTTACAGCAGTCGATAAGC TGTTTAACTTCAATTCATCGAAGCTGCGAATGGATCAGCGGGTTGACCTCAGCATGAGTGATCCAGACTTGGTCCCTCTTATAATTCAGGAAAACTATAT TAACTATAGACCAAGTTTGGCTGGCAAGGATGAGAATGGGATAAAACGAATGAACTTGCTTTCCCGTGCTGCAGACTCTATTGCAGATGGAGATTTAGTA AATGTACAAATCCGAAGGCATAGGCAGTGGCAGCTCTTTCAGGCTGGTTCTCTAGCATCCTGCATAATTCCTGCTGCATTGGTACATGGACAGAGAGAGA TCATGGAACCTGTGAGTCTCTCTCTTATCGTGATGGCCTTTCATCTTTATTCTGCTATTCCATACAGGGGGGAGGGCGAAAGAAATTTTAACAGGTTTGG TGGGTGGCTAGGAAAGAACTCAACGATGGGAAAAAATATGAGACTGTTGGAGGATCTCCATGTTCATCTTCTTGCTTCTCGAGAATCTAATATGGGGAGG GGGACTCTTCGACTTGATTATTTTACTGTTCTTCTAAAACAATTGACAGATCCTCTGCGCACGATGTCCAAGGATGAAGCCGTGGAGAAGGTCGTGGAGT TCATGGATGTATACTCAATAAGTCAGGAAGACATGGAGACCATTGTCGAGTTGGCTAAATTTAAGGGGCACCCAAATCCACTGGAGGGTGTACCAGCAGC TGTCAAATCAGCTTTGACTAGAGCGTACAAAGATGCAACCAAATCACGATTGGCACGAGCTGCAGATTTAGTCCCGATTTCCGGGATGAAAAAGGCCCCT AAGAAGCGAATAGCCGCAATGTTGGAACCTCCTAGTGAAGGTTTAGGGGAGGAAACTGTTGATCCAGTTGAAGAGAGTGAAGATGAGAACTCTTCTGACA CAGAGGATCCGGAAAGCACTCTCGACGGGGAGAAACTGCAGTCTAGCCTACAAAGTTTGAACTCCAAAGGGATAAAAGTTGAGATGGAATTGAAGAGTAG TACCCAAAATGCGAAGGGGAAGAAGGCACCGGGAGGTCGAGGTAGAGGCGGGGCGTCCAGTTCTGCAGAAAAGAAACCGGCAGGAAGGGGAAGAGGTGGC AGCAGTTCTGCTGGAGCTAAGAGAAAGAGATGA
AA sequence Show only first row Show all	>Lus10013372 pacid=23151355 polypeptide=Lus10013372 locus=Lus10013372.g ID=Lus10013372.BGIv1.0 annot-version=v1.0 MKPHDSGNGSTKKPATTTADNKPKPPPQLEPEPEPPVPESVGRRKTSKYFATDKQKPKDEKEAVKPPAKRKSQSESNPPVKATPPRKVQKVEDDDDGDDF VMSAKKKISVDATPSKKLKSGSGRGISQKGVVKDESEEEEAEETEPPPKAAGRGRGSRGAAGASAGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPD CLAGLTFVISGTLDRSSMIVFVSFLVLMLVFYAVNFFRPYSLEREEAEDLIKRHGGRITGSVSKKTSYLLCDEDIEGRKSAKAKELGTAFLTEDGLFDKI RSSKPAKVSPKEVPKVSAEKVSLVPKKSPQKAEVKGTSSVQGATKKGPAKAVTPVKRKQSIEPSSLPWTEKYRPKVPNDLVGNQSLVNQLHNWLKSWNDQ FLGGGKKGKGKQSDSAAKKAVLLSGTPGIGKTTSAKLACQMLGFQAVEVNASDTRGKADSKIFKGISGSNANSIKELINNESLSSKMDRPKHPKTVLIMD EVDGMSAGDRGGVADLIASIKISKMPIVCICNDRYSQKLKSLLNYCLVLTFRKPTKQQMAKRLMQIAYAEGLKVNEIALEELAERSNGDMRMAVNQLQYM SLSMSTIQYDDVRKRLLSSAKDEDISPFTAVDKLFNFNSSKLRMDQRVDLSMSDPDLVPLIIQENYINYRPSLAGKDENGIKRMNLLSRAADSIADGDLV NVQIRRHRQWQLFQAGSLASCIIPAALVHGQREIMEPVSLSLIVMAFHLYSAIPYRGEGERNFNRFGGWLGKNSTMGKNMRLLEDLHVHLLASRESNMGR GTLRLDYFTVLLKQLTDPLRTMSKDEAVEKVVEFMDVYSISQEDMETIVELAKFKGHPNPLEGVPAAVKSALTRAYKDATKSRLARAADLVPISGMKKAP KKRIAAMLEPPSEGLGEETVDPVEESEDENSSDTEDPESTLDGEKLQSSLQSLNSKGIKVEMELKSSTQNAKGKKAPGGRGRGGASSSAEKKPAGRGRGG SSSAGAKRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10013372 [exp]	0	1
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10020214 [exp]	1.0	0.8761
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	9.9	0.8247
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	10.1	0.8358
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	14.9	0.8489
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	15.5	0.8219
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	17.7	0.8659
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	23.7	0.7983
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10011250 [exp]	23.9	0.8630
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	28.4	0.8607
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	34.9	0.8543

Compare expression of checked genes

Lus10013372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.