Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13510 709 / 0 Protein of Unknown Function (DUF239) (.1) AT1G55360 704 / 0 Protein of Unknown Function (DUF239) (.1) AT5G56530 684 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 567 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 474 / 2e-166 Protein of Unknown Function (DUF239) (.1) AT1G10750 464 / 5e-162 Protein of Unknown Function (DUF239) (.1) AT5G50150 448 / 2e-156 Protein of Unknown Function (DUF239) (.1) AT1G23340 445 / 2e-155 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 441 / 1e-153 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 440 / 2e-153 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010315 [exp] 779 / 0 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 493 / 1e-173 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 479 / 1e-167 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 453 / 3e-157 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 451 / 2e-156 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 427 / 8e-148 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 402 / 2e-138 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 377 / 6e-129 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 376 / 1e-128 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G003800 [exp] 742 / 0 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 738 / 0 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 647 / 0 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 486 / 4e-171 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 483 / 5e-170 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 462 / 3e-161 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 461 / 2e-160 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 441 / 2e-153 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 438 / 2e-151 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 287 / 2e-93 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10013410 pacid=23155157 polypeptide=Lus10013410 locus=Lus10013410.g ID=Lus10013410.BGIv1.0 annot-version=v1.0 ATGGATACTGGTGTGGGTTTTAGCAGAAGATTGGTGCTTGCCCTTTTCAGCATATTGGGTTTTGTCTCTCTTTCCTCTGGGGCTCGCCTCTACTCAGATT CCAAGCACAGACTTGACGTCCACAAGCATTTGAATCGCTTGAACAAGCCTCCTCTCAACTCCATTCAGAGCCCAGATGGTGATATCATTGACTGTGTTCC CATTTCCAGCCAGCCAGCTTTTGATCATCCCTACCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTTCCACCCTGAGAAGGGCGTATTTGATGAGAAT AAAGTGGCTGCAGAATCTAATGTGAAAATAAATCCAATTAAGCAGCTATGGCATTCCAATGGGAAATGTGCTGAAGGTACCATTCCCATCAGAAGAACAA AGAAAGAAGATGTCCTAAGAGCAAGCTCTGTGAAAAGGTATGGCAAGAAGAAACACAGAACCATCCCCAAGCCAAAGTCTGCAGAACCTGATCTCATCAA CCAAAGTGGCCACCAACATGCTATAGCATATGTGCAAGGAGACAAGTACTTTGGTGCAAAGGGCACTATTAATGTTTGGGAACCAAAGATACAACAGAGT AACGAGTTCAGCCTTTCTCAGTTGTGGATACTTGGAGGATCCTTTGGTGAAGATCTTAACAGTATTGAAGCTGGTTGGCAGGTCAGTCCAGATCTCTATG GGGACAACAACACAAGGCTCTTCACATACTGGACTAGTGATGCATACCAAGCAACCGGGTGCTACAATCTTCTATGCTCAGGCTTTATTCAGATCAACAG TGAGATAGCAATGGGTGCAAGCATCTCTCCTGTTTCTGGCTACCGCAATTCCCAATATGACATCAGTATTCTTATCTGGAAGGATCCAAAGGAAGGGCAC TGGTGGATGCAATTTGGGAATGACTATGTTTTGGGTTACTGGCCTTCATTCCTCTTCTCATACTTGGCAGACAGTGCTTCCATGATTGAGTGGGGAGGTG AAGTTGTGAACACAGAGCCAGATGGTCAGCACACCTCAACCCAAATGGGGAGTGGTCATTTCCCAGAAGAAGGATTTGGGAAATCAAGTTACTTCAGGAA CATTCAAGTAGTGGATGAATCCAACAACCTCAAGGCACCCAAAGGCCTTGGTACCTTCACTGAGCAATCCAACTGCTATGATGTTCAAACAGGCAGCAAT GGAGATTGGGGTCATTACTTCTACTATGGTGGCCCTGGTAAAAACCCCAACTGCCAGTGA
AA sequence Show only first row Show all	>Lus10013410 pacid=23155157 polypeptide=Lus10013410 locus=Lus10013410.g ID=Lus10013410.BGIv1.0 annot-version=v1.0 MDTGVGFSRRLVLALFSILGFVSLSSGARLYSDSKHRLDVHKHLNRLNKPPLNSIQSPDGDIIDCVPISSQPAFDHPYLKDHKIQMRPSFHPEKGVFDEN KVAAESNVKINPIKQLWHSNGKCAEGTIPIRRTKKEDVLRASSVKRYGKKKHRTIPKPKSAEPDLINQSGHQHAIAYVQGDKYFGAKGTINVWEPKIQQS NEFSLSQLWILGGSFGEDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGYRNSQYDISILIWKDPKEGH WWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNTEPDGQHTSTQMGSGHFPEEGFGKSSYFRNIQVVDESNNLKAPKGLGTFTEQSNCYDVQTGSN GDWGHYFYYGGPGKNPNCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	0	1
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	1.0	0.8669
AT4G20350			oxidoreductases (.1.2)		Lus10028991 [exp]	5.8	0.7777
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	9.5	0.7759
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	9.8	0.8134
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	10.7	0.7717
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	11.2	0.7887
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	14.1	0.7829
AT2G26270			unknown protein		Lus10009795 [exp]	15.7	0.7437
AT3G02900			unknown protein		Lus10009524 [exp]	17.0	0.7433
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	17.1	0.8176

Compare expression of checked genes

Lus10013410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.