Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50140 1015 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 785 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 390 / 1e-116 AAA-type ATPase family protein (.1.2) AT4G02480 383 / 1e-113 AAA-type ATPase family protein (.1) AT4G24860 325 / 7e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 318 / 8e-94 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 311 / 4e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 309 / 2e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 298 / 4e-85 AAA-type ATPase family protein (.1) AT5G53540 229 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010204 [exp] 1103 / 0 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 850 / 0 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040976 [exp] 353 / 7e-108 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 352 / 8e-103 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 349 / 1e-101 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10024692 [exp] 322 / 7e-95 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 319 / 5e-94 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 314 / 3e-92 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 310 / 9e-91 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069800 [exp] 1122 / 0 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 1051 / 0 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G096300 [exp] 380 / 2e-112 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 378 / 4e-112 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 373 / 3e-110 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 362 / 2e-106 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.001G097600 [exp] 324 / 8e-96 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 316 / 6e-93 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G133700 [exp] 315 / 1e-92 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 312 / 2e-91 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10013429 pacid=23155079 polypeptide=Lus10013429 locus=Lus10013429.g ID=Lus10013429.BGIv1.0 annot-version=v1.0 ATGTATGCAAGGATAATCAGGAGCAATAGTCATAAACAGAGTTCTGTTTTTAAGCCCTCAATACAATTGATTTGGTCGAATCCGTTGGATCGTACTTGTG CTCAATCTCTGATCCATACAGCTGATGTTTCAGTCTGCAATCTCCAAAAAAGTCCAGTAAGGAGATATATTGTTAATTCATTTGCATCCTGCAGCAGTAC GTCAGGTACTAGATATATTAGTTCCACCTCAAGCCTCAGTTCATATTGTAAAAGGTTTCAGTTGCGTGCCTATAGTTCGGAAGGTGATGGACAGAATACA AGTGAGGAAAAGCATGCACCTCTGAGTAGTGAACCTAAGTTTAATGATGGAAAACTACGACACGACAAAGTCATTGGAGATTCCAAAGATAATAATACAC ATGCTTACCTAGTAGAACAAGATCAAAAGGAATGGCTTCATAATGAGAAGCTGGCTGTAGAGGCTAAAAAGAAGGAATCGCCTTTTTTAACTAGGCGGGA GAGATTTAAAAATGAGTTCATGCGAAGGGTTGTTCCGTGGGAGAAAATCCATGCTTCTTGGGAAACATTTCCATACTACATCAATGAGAATTCCAGAAGT GTTTTATTGGAATGTGTTGCTTCCCACTTGAAGCACACGAATTGTTCAGCTTCATATGGGGCTCGTTTGATGTCTTCAAGTGGCAGAATACTGCTTCAGG GCACACCAGGAACCGAGCTTTATCGGGAAAGACTTGTAAGAGCACTTGCAAGAAAGTTACAAGTTCCTCTGCTAGTTCTTGATAGCAGTGTTCTTGCTCC TTGTGATATTGAAGATTGTTCATCAGAGTCTGAGTCGGATGATGCTGCAGAATCTGGGGACGAGTGTACATCAGAGTCTGAGGCTGATGAAGAGAATGAA GCAGTTAATGAAGAGGAGTGGACGAGCAGTGCCGAGGGAAAATCAGATGGTAGTGAAGATGAAACAGCTGATGTGGCAGCAACTGCCGAGGCGGCCCTCA GGAAGTTAATTCCCTACCATGTAGAAGACTTTGAGAGGCAAGTCTCCGGAGAATCAGAAGCCTATTCAGGAATGTCGAAGTCTGGAAATGCTGAGCCTTC AGATAACTCCCAAAGGCCTCTTAAGAAAGGTGACCGGGTGAAGTACGTAGGCAGTTCCAAATCTGTTGAAGCTGGTAACAGGATCACATTGGGGAAGATA CCTACTTCTGATGGTCTGAAAAATGCTTTTACGAATATTCGTGGCAGCAACTCTAGAACATGCACCTTGATGATGACCTACTTGTCCATTTGTCGGGATG TTAGAGGACTGCAATACTTCATTGTACTCTCTAACATCCCTTGGTTTTACAAAAAACGGTGTCTTGTAGGACTTAGTCGCTGCCAATTTTGTTTCAGGCC CTTGTCAAATGGTCAACGTGGCGAGGTATATGAGGTCACTGGAAGTCAAGTTGCTGTGATCTGGGATATTGGGATACTTGAGGAACATGATTACCTTTCT GGAAAGGCATCCGTATATTGGATAAATGTTAAGGATATTGAGCATGACCCTGATGCGGAGGCTGATGACTGTTATATCGTAATGGGGGCATTATATGAGA TCATGCGTACCATGCAGCCTCTTATAGTATACTTCCCGGACTTTTCTGTGTGGTTGTCTAGGGCGGTACCCAAGTCAAACCGTCACGAGTTTCTCCACAG GATGCAGGAAACCCTTGACCAACTTTCTGGTCCTGTTGTTTTGATAAGTGGCCAAAGCAAAGTCGAGGCTGGATCAGGGTTAAAGGAGAAAGGGAAATTT ACAATGATCCTTCCAAATTTTGCTCAACTGGCTAAGCTGCCTCCTACTTTGAAGAACCTTACTGAAGGTTCTAGAGGGACTAAAAGATCTAGTTTCAATG AAACCAGAAAGGTTTTTACTAATGTTTTGCTCATGGACCCCCCTGAGGAAGAAGATCTTCTTAGGACATTCAACAAACAGATTGAGGAGGATAGGAAAAT TGTAATATCAAGGAGCAATTTCAATGAACTTCATAAGGTTCTTGAAGAAAATCAGATGCTGTGTTCGGACTTATTGAATGTCGATACTGATGATGTTGTT CTGACTAAGCAAAAAGCTGAAAAGGTTGTTGGCTGGGCTAAGAATCACTATCTTTCCTCATGCTCAGTTCCATCAATAGAAGGGGAAAGATTGGTTTTGC CGTGCAAAAGTTGCTATCTTGAGGTTGAAAGATCAGGCAACCTCTTCAAGAAAGCCATCTCAAGATTTGAAGGCATGTTTTTGATTTGTCCATCGTGTAT CGATAACTTGGCAAAGGATGAATATGAGAGCAACTTTGTTTCGGCTGTGGTACCTCCTGGAGAGATTGGTGTCAGATTCGATGATGTAGGAGCTCTTGAG CATGTGAAGAAGGCCTTGAATGAACTAGTTATTCTCCCCATGAGCAGACCGGAGCTTTTTTCACATGGAAATCTGTTGAGGCCTTGCAAAGGAATATTGC TATTTGGACCTCCTGGAACTGGGAAGACTCTTTTGGCTAAAGCACTTGCCACAGAAGCAGGGGCCAACTTTATCAACATAACAGGTTCAACTCTTACATC AAAGCCTTGCAAAGGAATATTGCTATTTGGACCTCCTGGAACTGGGAAGACTCTTTTGGCTAAAGCACTTGCCACAGAAGCAGGGGCCAACTTTATCAAC ATAACAGGTTCAACTCTTACATCAAAGTGGTTTGGAGATGCTGAAAAGTTGACAAAGGCCCTTTTCTCCTTTGCCAACAAGCTGGCTCCTGTTATTATAT TTGTTGATGAGGTTGATAGTTTGCTAGGTGCTCGCGGGGGCGCTTCTGAGCATGAGGGTACAAGAAGAATGAGAAATGAATTCATGGCTGCATGGGATGG ATTAAGATCGAAAGACAGTCAGAGGATCCTCGTCCTTGGTGCTACAAATCGACCGTTTGATCTTGATGATGCGGTGATTCGTCGTTTACCTAGGAGGATA TATGTGGACTTACCGGATGCCGAGAATCGTATGAAGATTCTAAAAATAATTCTTGGAAATGAGAATTTACAAACAGATTTCCAGTTTGAAGAACTTGCTA ATGCAACCGAGGGATACTCTGGCAGTGACTTAAAGAACCTTTGTATCGCCGGGGCATATAGACCTGTGCAAGAAATCCTCGAAAAAGAAAACAAGGAAGA TAAAGATCGTGTTGACGGTGCAGCACTAAGACCGCTCACCTTGGTTGATTTTATCCAGTCAAAGGCTAAGGTCGGTCCATCAGTTGCATATGATGCATCG AGCATGAACGAGTTGCGAAAATGGAACGAGCAATACGGGGAAGGGGGAAGTCGGCGAAAGACCCCCTTTGGCTTTTGA
AA sequence Show only first row Show all	>Lus10013429 pacid=23155079 polypeptide=Lus10013429 locus=Lus10013429.g ID=Lus10013429.BGIv1.0 annot-version=v1.0 MYARIIRSNSHKQSSVFKPSIQLIWSNPLDRTCAQSLIHTADVSVCNLQKSPVRRYIVNSFASCSSTSGTRYISSTSSLSSYCKRFQLRAYSSEGDGQNT SEEKHAPLSSEPKFNDGKLRHDKVIGDSKDNNTHAYLVEQDQKEWLHNEKLAVEAKKKESPFLTRRERFKNEFMRRVVPWEKIHASWETFPYYINENSRS VLLECVASHLKHTNCSASYGARLMSSSGRILLQGTPGTELYRERLVRALARKLQVPLLVLDSSVLAPCDIEDCSSESESDDAAESGDECTSESEADEENE AVNEEEWTSSAEGKSDGSEDETADVAATAEAALRKLIPYHVEDFERQVSGESEAYSGMSKSGNAEPSDNSQRPLKKGDRVKYVGSSKSVEAGNRITLGKI PTSDGLKNAFTNIRGSNSRTCTLMMTYLSICRDVRGLQYFIVLSNIPWFYKKRCLVGLSRCQFCFRPLSNGQRGEVYEVTGSQVAVIWDIGILEEHDYLS GKASVYWINVKDIEHDPDAEADDCYIVMGALYEIMRTMQPLIVYFPDFSVWLSRAVPKSNRHEFLHRMQETLDQLSGPVVLISGQSKVEAGSGLKEKGKF TMILPNFAQLAKLPPTLKNLTEGSRGTKRSSFNETRKVFTNVLLMDPPEEEDLLRTFNKQIEEDRKIVISRSNFNELHKVLEENQMLCSDLLNVDTDDVV LTKQKAEKVVGWAKNHYLSSCSVPSIEGERLVLPCKSCYLEVERSGNLFKKAISRFEGMFLICPSCIDNLAKDEYESNFVSAVVPPGEIGVRFDDVGALE HVKKALNELVILPMSRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFINITGSTLTSKPCKGILLFGPPGTGKTLLAKALATEAGANFIN ITGSTLTSKWFGDAEKLTKALFSFANKLAPVIIFVDEVDSLLGARGGASEHEGTRRMRNEFMAAWDGLRSKDSQRILVLGATNRPFDLDDAVIRRLPRRI YVDLPDAENRMKILKIILGNENLQTDFQFEELANATEGYSGSDLKNLCIAGAYRPVQEILEKENKEDKDRVDGAALRPLTLVDFIQSKAKVGPSVAYDAS SMNELRKWNEQYGEGGSRRKTPFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	4.9	0.9350
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	5.5	0.9245
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	5.5	0.9295
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	5.8	0.9421
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	7.0	0.9224
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	7.1	0.9124
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	11.4	0.9093
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10010334 [exp]	13.2	0.9064
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	14.5	0.9205
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	15.0	0.9217

Compare expression of checked genes

Lus10013429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.