Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08520 297 / 1e-100 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 210 / 2e-66 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 195 / 4e-60 MYB Homeodomain-like transcriptional regulator (.1) AT5G58900 170 / 4e-51 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 169 / 1e-50 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G04760 165 / 4e-50 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G05790 163 / 2e-48 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 160 / 1e-47 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G01200 147 / 1e-42 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G10580 122 / 6e-33 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041001 [exp] 457 / 8e-164 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10040696 [exp] 177 / 2e-53 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 176 / 5e-53 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 166 / 2e-49 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10014837 [exp] 164 / 5e-49 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10041088 [exp] 159 / 2e-47 AT5G04760 233 / 1e-77 Duplicated homeodomain-like superfamily protein (.1) Lus10036413 [exp] 158 / 3e-47 AT5G04760 234 / 3e-78 Duplicated homeodomain-like superfamily protein (.1) Lus10009884 [exp] 156 / 1e-45 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 155 / 1e-45 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076200 [exp] 383 / 2e-134 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 366 / 5e-128 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 227 / 3e-73 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 176 / 2e-53 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.010G240800 [exp] 174 / 2e-53 AT5G04760 232 / 3e-77 Duplicated homeodomain-like superfamily protein (.1) Potri.009G042600 [exp] 176 / 5e-53 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.001G219100 [exp] 172 / 8e-53 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 173 / 4e-52 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 171 / 4e-51 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.010G193000 [exp] 162 / 4e-48 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013447 pacid=23155170 polypeptide=Lus10013447 locus=Lus10013447.g ID=Lus10013447.BGIv1.0 annot-version=v1.0 ATGGCTGTGGATGAAGTGGGTAGCAGCTGCTCTTGGACTAGAGAGCAAGATAAAGCGTTCGAAAATGCACTGGCAACTTACCCAGAGGACGATTCAGATC GATGGGAGAAAATTGCTACAGACGTGGAGGGGAAGACACTGGAAGAGGTTAAAGACCACTTTGACCTCCTGCTTGAGGACATTGGTCTCATTGAATCTGG GTGTGTTCCTTTACCCAGCTATAATTCGTCTTCCGAGTCTTCCACCAGCCATGGCGGCGACGAAGGTACTGGTAAGAAGGGTGGCCATGGAGGAGGAAAC AACAACAGTGAGTCCAATCAGGGGAATAAGGGTTCAAGGGCAGATCAGGAACGCCGCAAGGGAATTGCTTGGACAGAAGATGAACATAGGTTATTCCTTC TAGGATTGGAAAAATATGGAAAAGGTGACTGGAGAAGTATATCGAGGAATTTTGTGGTGACGAGGACACCTACCCAAGTTGCTAGCCATGCTCAGAAGTA TTTCATCCGGTTGAACTCGATGAACAAGGACCGAAGGCGTTCCAGCATTCACGATATCACTAGTCTAAACAATGGGGAGATAGCTGCTGCACAAGGACCA ATAACTGGACAAACAAATGGCGCTTCTGCTGGTGTAGGGGGTTCGGGAAAGGCAGGGAAACAGCCATCTCAACATCCCGGCGGACCTCCAGGAGTGGTGG GGATCTACGGTGCTCCGACAATAGGTCAACCAATTGGAGGTCCATTGGTTTCAGCAGTAGGGACGCCTGTGAATCTAGCTTCACCATCACACATGGCATT TGGAGTGAGAGCCCGAGTTCCAGGAGCAATGGTTCCAGGGGCTCCAATGACAATGGGTGGTCCGATGGCATATCCAATGCCCCCGACTACAAGTGCGCAT AGGTAA
AA sequence Show only first row Show all	>Lus10013447 pacid=23155170 polypeptide=Lus10013447 locus=Lus10013447.g ID=Lus10013447.BGIv1.0 annot-version=v1.0 MAVDEVGSSCSWTREQDKAFENALATYPEDDSDRWEKIATDVEGKTLEEVKDHFDLLLEDIGLIESGCVPLPSYNSSSESSTSHGGDEGTGKKGGHGGGN NNSESNQGNKGSRADQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSLNNGEIAAAQGP ITGQTNGASAGVGGSGKAGKQPSQHPGGPPGVVGIYGAPTIGQPIGGPLVSAVGTPVNLASPSHMAFGVRARVPGAMVPGAPMTMGGPMAYPMPPTTSAH R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	1.4	0.9281
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	1.4	0.9242
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	1.7	0.9058
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	3.2	0.9005
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	3.5	0.8934
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	5.3	0.8752
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	6.0	0.8588
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	6.3	0.9014
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	8.7	0.8470
AT5G62910			RING/U-box superfamily protein...		Lus10004246 [exp]	9.0	0.8167

Compare expression of checked genes

Lus10013447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.