Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01120 282 / 4e-92 ORC4, ATORC4 origin recognition complex subunit 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007944 [exp] 638 / 0 AT2G01120 554 / 0.0 origin recognition complex subunit 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126300 [exp] 474 / 2e-167 AT2G01120 601 / 0.0 origin recognition complex subunit 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10013481 pacid=23155121 polypeptide=Lus10013481 locus=Lus10013481.g ID=Lus10013481.BGIv1.0 annot-version=v1.0 ATGCCGAACCAGAAATACGCTCAGGAAGCTCAAATCCTCCTCAGGAGCAGACTCTGTAACCCTAGTTTCGTCTTCAAGGCCCTTTCCGACTCTCCGGATA GCAATTACAGCAAACTGAAGTTCATTGTGTCAAGTTCGGTCACAGAAGCATGCAACAACTCACTGCTACTTCTTGGGCCCCGTGGCTCTGGAAAGACTGC AGTCCTCGAGCTCGTGCTGAACGATTTATTGGAAGAATATCCTGATATGATATCTGTGATCAGATTGAATGGACTGATACATAATGATGACATCTCCGCC TTCAAGGAAATTGCTAGGCAGCTGTGCATGGAGCATCAGTTGCTATTCTCGAAGATGGCATCATTTGATGATAACTCCCAGTTCTTGATAGCCATGCTAA GGGAGTGTGGCTTAGCTCACAAAACAATCGTCTTTGTGCTTCAAGAGTTTGACCTATTCGCTCAGGGAAAACAACGTTTACTTTATAGCTTGCTGGACGC AATGCAGTCAATATCATCTCAAGCCGTCATCATCGGTGTTAGTTGTAAATTGGATGCTGATCAGCTGCTGGAAAAAAGAGTTGCTGCAACACATCTTACT ATTGCCAACGGACACAGCTCTTCCGAACCTTTATGTTACCCAATTCAATGCAAAGCTCCAGCCGTCTCTTCGATCGATATGAAATCTGGCTACCCGTCTC TTGAGAGTTTCAAGGCAGCATTTTCAAGCTTCCAAAGGCAACCAAAGCTAGAATGCATAAAAGATTGCTCTATACTGGAACTCTTCATGCTGGTATGCAT GAGGAGATTGGAATGGAAGGAGCAGAACTCCTATAACTTCAATTCTGTCATGAAAGAGTACAAATCTATCGACGACCAATTCAAGGCATCCGATAACTAT GCAAGAAACGTATGCTTGAGGGCATTTGAACATCTTCTGCAGCGTGATCTGATATGTTTCCTCGACAAACGAGGAAATGGTCAGTCTTTGGAGTTCCGCC CAGCAAAGTGTCTAATCTCGCACATCGAGCTCCAACAAGGGATCGAAGCATATCGTTCATGTCCCGTATGTTCCTTGCATCTTGCTTCTTACTTTCAGTC CATGTTCATCTAA
AA sequence Show only first row Show all	>Lus10013481 pacid=23155121 polypeptide=Lus10013481 locus=Lus10013481.g ID=Lus10013481.BGIv1.0 annot-version=v1.0 MPNQKYAQEAQILLRSRLCNPSFVFKALSDSPDSNYSKLKFIVSSSVTEACNNSLLLLGPRGSGKTAVLELVLNDLLEEYPDMISVIRLNGLIHNDDISA FKEIARQLCMEHQLLFSKMASFDDNSQFLIAMLRECGLAHKTIVFVLQEFDLFAQGKQRLLYSLLDAMQSISSQAVIIGVSCKLDADQLLEKRVAATHLT IANGHSSSEPLCYPIQCKAPAVSSIDMKSGYPSLESFKAAFSSFQRQPKLECIKDCSILELFMLVCMRRLEWKEQNSYNFNSVMKEYKSIDDQFKASDNY ARNVCLRAFEHLLQRDLICFLDKRGNGQSLEFRPAKCLISHIELQQGIEAYRSCPVCSLHLASYFQSMFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	0	1
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	1.4	0.9558
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	2.0	0.9533
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	3.5	0.9441
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	4.2	0.9525
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	5.9	0.9400
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	6.5	0.9308
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	6.5	0.9345
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	8.1	0.9070
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	8.5	0.9289
AT4G08630			unknown protein		Lus10001720 [exp]	9.3	0.8649

Compare expression of checked genes

Lus10013481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.