Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75790 446 / 6e-154 SKS18 SKU5 similar 18 (.1) AT4G22010 337 / 2e-111 SKS4 SKU5 similar 4 (.1) AT1G21850 323 / 5e-106 SKS8 SKU5 similar 8 (.1) AT1G76160 316 / 2e-103 SKS5 SKU5 similar 5 (.1) AT4G12420 317 / 3e-103 SKU5 Cupredoxin superfamily protein (.1.2) AT1G21860 316 / 3e-103 SKS7 SKU5 similar 7 (.1) AT2G23630 311 / 2e-101 SKS16 SKU5 similar 16 (.1) AT1G41830 311 / 2e-101 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G28090 310 / 6e-101 SKS10 SKU5 similar 10 (.1) AT4G38420 310 / 1e-100 SKS9 SKU5 similar 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017262 [exp] 561 / 0 AT1G75790 518 / 0.0 SKU5 similar 18 (.1) Lus10022465 [exp] 328 / 1e-107 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10024604 [exp] 328 / 2e-107 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 327 / 5e-107 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10020022 [exp] 325 / 2e-106 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 324 / 3e-106 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10028921 [exp] 324 / 1e-105 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 323 / 2e-105 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10016770 [exp] 328 / 4e-105 AT5G66920 837 / 0.0 SKU5 similar 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021000 [exp] 476 / 6e-166 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.004G180500 [exp] 335 / 8e-111 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 335 / 2e-110 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 334 / 3e-110 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.003G112700 [exp] 335 / 6e-110 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 333 / 3e-109 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.004G010100 [exp] 326 / 5e-107 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.014G154500 [exp] 323 / 6e-106 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.014G177700 [exp] 321 / 1e-104 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G227600 [exp] 318 / 7e-104 AT1G76160 794 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10013556 pacid=23168765 polypeptide=Lus10013556 locus=Lus10013556.g ID=Lus10013556.BGIv1.0 annot-version=v1.0 ATGGAGTTCAAGGAACAAACTGTCCGATTCAGCCTGGCCAAAACTGGACTTACAGTTTCCAGATTAAGGACCAAATTGAATCTGAGAGGGTTACTTGAGC AAGGCAAGCATTTACCTCATCCTGATGGCATTCTCATCAATGGTCACGGACCCAATCGATTCAATCTTGGGTTTCAACCCGGGGCTACATATAGGCTAAG GATTTCGAACGTGGGAACTCGAACATCGCTCAACTTCAGAATTCAGGACCATCCATTGCTGCTGGTGGAGACTGAAGGGTCTTACACAGTTAAGAAGTAT TACAATAGTTTGGACATCCATGTGGGTCAATCCTACTCTGTCTTGGTCACAGCAAAGAGCCGAAACATTCATGGAAAGTCGTACAACATGTTCGCTAGCT CTCGATTCACCGCATCTAGGATATTTGGAGTTGGAGTGGTCTACTATCCTGATTCGAATCGCCCACCTTCTGCTCCTCTTCATTCACGTCCATCTGCATT TGATTACCATTTCTCCATCAAACAAGCTCGTTCCATCAAGTGGGACTTGGAAGTGGGAGCTGCGAGGACAAACCCACAAGGTTCGTACCACTACGGGAGC ATCAACGTATCGAGAACACTTGTGCTGGAGAACAATCTCATAGTGGACGGATCAAACAAGCTTCGATACACAGTGAACGGGGTTTCTTTTGTGCACCCGG ATACGCCATTGAAGCTAGCCGATCGCTTCAAAATGTTCGACGAGCTGAAGACCGTGGTGGTTCCACCTATCCCTTACGTTCCACAGAAGAAGATACAGCA GTTGTTAGGGACTTCAGTTGTTGATGTGAAATGGCGTGACTTCTACCACTTGGTTTTCCAGAACCCACTCCCTTACCTCCAGACTTGGCATCTTGATGGC TACAACTTTTTCGTCGTTGGAATGGGGGCAGGGTCGTGGAATGAGAGTAGTGATAAAGCAACATATAACTTGGTGGATGCAGTTTCGAGATCAACGGTTC AGGTGTATCCTCGAGGGTGGACAGCAATACTGGTGATGTTGGACAACAGAGGGATATGGAACTTGAGGTCACAAAATGCAGAGAAATGGTATCTGGGGCA GGAACTGTATCTGAGAGTTAAGGGTAGTGGAGCTGAAGATCCAATGAGCATTCCTGAAAGAGATGAATCTCCAATCCCTCAGAATGCAATTTTATGCGGA CGAGTCATGAATCTCACCTACTATTGA
AA sequence Show only first row Show all	>Lus10013556 pacid=23168765 polypeptide=Lus10013556 locus=Lus10013556.g ID=Lus10013556.BGIv1.0 annot-version=v1.0 MEFKEQTVRFSLAKTGLTVSRLRTKLNLRGLLEQGKHLPHPDGILINGHGPNRFNLGFQPGATYRLRISNVGTRTSLNFRIQDHPLLLVETEGSYTVKKY YNSLDIHVGQSYSVLVTAKSRNIHGKSYNMFASSRFTASRIFGVGVVYYPDSNRPPSAPLHSRPSAFDYHFSIKQARSIKWDLEVGAARTNPQGSYHYGS INVSRTLVLENNLIVDGSNKLRYTVNGVSFVHPDTPLKLADRFKMFDELKTVVVPPIPYVPQKKIQQLLGTSVVDVKWRDFYHLVFQNPLPYLQTWHLDG YNFFVVGMGAGSWNESSDKATYNLVDAVSRSTVQVYPRGWTAILVMLDNRGIWNLRSQNAEKWYLGQELYLRVKGSGAEDPMSIPERDESPIPQNAILCG RVMNLTYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	0	1
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	2.0	1.0000
					Lus10005830 [exp]	2.8	1.0000
					Lus10009618 [exp]	3.5	1.0000
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	4.5	1.0000
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	5.0	1.0000
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	5.5	1.0000
					Lus10018225 [exp]	6.0	0.9993
					Lus10038463 [exp]	6.3	0.9998
AT3G14880			unknown protein		Lus10013711 [exp]	6.3	0.9990
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	6.5	0.9998

Compare expression of checked genes

Lus10013556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.