Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 187 / 1e-58 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 183 / 5e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 172 / 3e-52 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 172 / 4e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 169 / 8e-52 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G51680 171 / 1e-51 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 166 / 2e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 162 / 4e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 158 / 2e-47 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 148 / 6e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021257 [exp] 456 / 1e-164 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 271 / 3e-91 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 261 / 2e-87 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 251 / 1e-83 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10010544 [exp] 250 / 4e-83 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021258 [exp] 248 / 3e-82 AT2G47140 177 / 2e-54 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 246 / 1e-81 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 236 / 8e-78 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 236 / 1e-77 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206400 [exp] 239 / 1e-78 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 238 / 1e-78 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 237 / 7e-78 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 236 / 1e-77 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 236 / 2e-77 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 228 / 1e-74 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 228 / 1e-74 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 215 / 2e-69 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 207 / 3e-66 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 203 / 8e-65 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10013595 pacid=23168776 polypeptide=Lus10013595 locus=Lus10013595.g ID=Lus10013595.BGIv1.0 annot-version=v1.0 ATGAAAGGTTCCATTATGTCTCAAAGGCTAAAAGGCAAGGTCGCCTTGATTACCGGCGGGGCCAGCGGGATAGGAGCCGCCTCGGCCAGGCTGTTCGCCA ACCATGGTGCAAATGTCATCGTGGCAGACATCCAATCTGACCACGACGACAAAGGCACAAAACAAAAGCTCGGCCACCCTTCGATCTCCTACGTCCACTG CAACGTCAGCAAGGAATCTGACGTCCAAAACGCAGTTGACGCTGCCGTTTCGGCCCACGGGAAGCTGGACGTCATGTTCAGCAATGCAGGAGTGGTCGGG CGGAACAACCTGTCTATGAACATATCCAAGCTGGACAAAAACGACATTGATCGGGTCTTCGGGGTCAACGTCTACGGCACGTTCTACGCCGCCAAGCACG CAGCGCGCGTGATGATCCCGGAGAAAAGGGGTAGTATAGTGTTCACCGCCAGCTACGTGACAGAGTCGTTTGGGGACGCCGGACACCCCTATACGGCGTC GAAGCACGCCGTGGTGGGGCTGATGAAGAATCTGAGCGTGGAGTTGGGTGCTCACGGGATACGGGTGAACTCTGTGTCGCCGTTTGGGGTGGCGACGCCA TTAGTCTTGGAAGCTACTGGTGTGACGGATCCGAAGATCATAACTGACGGCGTTACGGCGAGGGTTGGACTGGGAGGGGCGGTCTTGGAAGCTGATGACG TGGCGGAGGCGGCGCTGTACCTGGCGAGTGAGGATTCAAAGTTTGTTAGTGGGTTGAATGTTCTTGTTGACGGCGGCTTTAACTTGAAAAGTGCTTAA
AA sequence Show only first row Show all	>Lus10013595 pacid=23168776 polypeptide=Lus10013595 locus=Lus10013595.g ID=Lus10013595.BGIv1.0 annot-version=v1.0 MKGSIMSQRLKGKVALITGGASGIGAASARLFANHGANVIVADIQSDHDDKGTKQKLGHPSISYVHCNVSKESDVQNAVDAAVSAHGKLDVMFSNAGVVG RNNLSMNISKLDKNDIDRVFGVNVYGTFYAAKHAARVMIPEKRGSIVFTASYVTESFGDAGHPYTASKHAVVGLMKNLSVELGAHGIRVNSVSPFGVATP LVLEATGVTDPKIITDGVTARVGLGGAVLEADDVAEAALYLASEDSKFVSGLNVLVDGGFNLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	0	1
					Lus10010257 [exp]	1.0	0.9950
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	2.4	0.9904
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	3.2	0.9902
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	4.6	0.9897
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	4.9	0.9923
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	5.0	0.9866
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	6.0	0.9898
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	8.5	0.9903
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	8.7	0.9830
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	8.8	0.9890

Compare expression of checked genes

Lus10013595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.