Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58030 944 / 0 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 874 / 0 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 755 / 0 CAT4 cationic amino acid transporter 4 (.1.2) AT1G05940 251 / 6e-75 CAT9 cationic amino acid transporter 9 (.1) AT4G21120 233 / 5e-68 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 232 / 6e-68 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 229 / 6e-67 CAT7 cationic amino acid transporter 7 (.1) AT2G34960 223 / 1e-64 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 189 / 5e-52 CAT8 cationic amino acid transporter 8 (.1) AT3G13620 47 / 4e-05 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001334 [exp] 1228 / 0 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 1131 / 0 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 1107 / 0 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 1067 / 0 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 764 / 0 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10020305 [exp] 760 / 0 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10028195 [exp] 244 / 2e-72 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10001581 [exp] 245 / 1e-70 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 239 / 2e-70 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039700 [exp] 972 / 0 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.013G065000 [exp] 957 / 0 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 823 / 0 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.015G133100 [exp] 245 / 2e-72 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 239 / 4e-70 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.002G137000 [exp] 230 / 3e-67 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1) Potri.008G017100 [exp] 230 / 4e-67 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.013G030833 [exp] 230 / 6e-67 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 230 / 6e-67 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.010G241000 [exp] 228 / 4e-66 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10013638 pacid=23171604 polypeptide=Lus10013638 locus=Lus10013638.g ID=Lus10013638.BGIv1.0 annot-version=v1.0 ATGGGGTTTCTGGTGGATTCGCAGAAGGATGGAGGAACACACGGGTTACTAGGAAGTTGCGTGAGGACTCTGATTAGGAGGAAACAGGTTGATTCAGCTG ACGGAAATGGACATGGCCACGGTCATCATCAGTTGGCTAAGGAGTTGTCTGTTCTTCATCTCATCGCCATTGGGGTTGGGTCAACGATTGGAGCTGGAGT ATACATTCTTGTAGGGACAGTAGCCAGAGAGCACTCAGGGCCAGCACTGGCCATATCCTTTCTGATAGCTGGATTTGCAGCTGCTCTATCAGCTTTCTGC TATGCAGAACTTGCAAGTCGTTGCCCATCTGCTGGCAGTGCCTATCACTACTCCTACATTTGTGTCGGAGAAGGAGTTGCTTGGTTGGTTGGCTGGGCTT TAATTCTGGAATACACAATTGGTGGGTCAGCAGTTGCCCGCGGGATCTCCCCAAATCTGGCATTGCTTTTTGGCGGTGAAGGCAGCCTTCCTTTTTTTCT GGCACGTCAGACCATACCTGGGCTTGGTATTGTGGTCGACCCATGTGCTGCGATTTTAGTGTTTGTCGTCACTGGCCTCTTGTGCGTGGGGATCAAAGAG AGTACTGTGGTACAAGGAGTAGTGACCACTGTGAACGTCTGTGCCATGCTATTTATCATAATAGCCGGAACTTACTTGGGCTTCAAGACTGGTTGGTCTG GATATGAGCTTCCTACCGGGTACTTCCCCTTTGGGGTAGATGGCATGCTTGCAGGCTCTGCTACTGTCTTCTTTGCTTACATCGGTTTTGACTCAGTTGC CAGCACGGCTGAAGAGGTGAAAAATCCTCAACGAGATTTACCATTGGGAATAGGCTTCGCACTGTCTATCTGTTGTTCCCTATATATGCTGGTGTCGATT GTCGTCGTTGGTTTGGTCCCATATTATGCGATGGATCGCGATACTCCCATCTCCTCTGCATTTGCTTCTCATGGGATGCAATGGGCAGTTTATATTATAA CCGCTGGAGCTGTTATGGCACTCTGCTCCACGTTGATGGGTTCACTTTTACCTCAGCCTCGAATTTTAATGGCCATGGCTAGAGACGGATTGCTACCATC ATTTTTCTCAGATGTCAACCCTAAAAGCCAAGTTCCTGTTAAGAGTACAGTGGTGACAGGGCTCTGTGCTGCTACTCTTGCATTTTGTATGGATGTTGAT CAATTGGCTGGGATGGTTAGTGTTGGTACACTTCTTGCCTTCACAATGGTAGCAATTTCAGTGCTAATACTCAGATATGTTCCACCAGATGAGGTGCCTG TTCCATCCTCACTTCAGCAAACAATAGATTGTGTGTCGTCACAGTACACCAGGAATAGTGAGGGTTCTAAAAGGAGAAAGACTAAGGTTCATGTTGGAAC TTCTGAGGATGCTAAATCGCCATTGCTTGGTGAAAAGAATTCATTAGTGGATAATCCCGACCTCGTAAAATTTGAACCTCCAGTTAAATATGTCTTGAGT GAAGATAAAAGGCGGAAAATCGCAGGCTGGACTATAGCATTCACATGCGTGGGAGCATTCACCCTTACATATGCGGCATCAAATTTGATTATCCAATGGC TCCTACGGTATTGCTTGTGCGGTTTTGGTGGTGCTTTTTTGCTTACTGGCTTGATTGTATTGACCTGTTTAGAGCAAGATGATGCAAGGCATAAGTTTGG ACACTCAGGAGGTTTCACGTGCCCGTTTGTTCCTCTCCTTCCCATATTCTGCATTCTGTTCAACACCTACCTGCTCGTCAATCTCGGTGCTGCCACTTGG GCTCGTGTTTCTGTATGGCTCGGGATTGGCATCGTCGTATATGTGTTCTATGGCCGGAAAAACAGCTCGTTGATGGATGCAGTGTATGTGCCCGTAGCTC ATGCCGATGAGATATATGGAAGAAGTAGCTCTGGAGATACTTTGGCTTAA
AA sequence Show only first row Show all	>Lus10013638 pacid=23171604 polypeptide=Lus10013638 locus=Lus10013638.g ID=Lus10013638.BGIv1.0 annot-version=v1.0 MGFLVDSQKDGGTHGLLGSCVRTLIRRKQVDSADGNGHGHGHHQLAKELSVLHLIAIGVGSTIGAGVYILVGTVAREHSGPALAISFLIAGFAAALSAFC YAELASRCPSAGSAYHYSYICVGEGVAWLVGWALILEYTIGGSAVARGISPNLALLFGGEGSLPFFLARQTIPGLGIVVDPCAAILVFVVTGLLCVGIKE STVVQGVVTTVNVCAMLFIIIAGTYLGFKTGWSGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPLGIGFALSICCSLYMLVSI VVVGLVPYYAMDRDTPISSAFASHGMQWAVYIITAGAVMALCSTLMGSLLPQPRILMAMARDGLLPSFFSDVNPKSQVPVKSTVVTGLCAATLAFCMDVD QLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSSLQQTIDCVSSQYTRNSEGSKRRKTKVHVGTSEDAKSPLLGEKNSLVDNPDLVKFEPPVKYVLS EDKRRKIAGWTIAFTCVGAFTLTYAASNLIIQWLLRYCLCGFGGAFLLTGLIVLTCLEQDDARHKFGHSGGFTCPFVPLLPIFCILFNTYLLVNLGAATW ARVSVWLGIGIVVYVFYGRKNSSLMDAVYVPVAHADEIYGRSSSGDTLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	0	1
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10007065 [exp]	3.2	0.9564
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	4.2	0.9556
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	4.4	0.9637
AT4G19160			unknown protein		Lus10025855 [exp]	4.5	0.9621
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	5.7	0.9595
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026072 [exp]	8.4	0.9374
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	10.8	0.9491
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	13.9	0.9467
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	14.0	0.9357
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	14.8	0.9590

Compare expression of checked genes

Lus10013638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.