Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24790 661 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 345 / 2e-102 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 330 / 1e-97 AAA-type ATPase family protein (.1) AT5G45720 297 / 1e-86 AAA-type ATPase family protein (.1.2) AT4G18820 294 / 6e-85 AAA-type ATPase family protein (.1) AT1G21690 62 / 4e-10 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 49 / 1e-05 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033035 [exp] 1527 / 0 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10042401 [exp] 332 / 2e-97 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10015234 [exp] 295 / 1e-85 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10005422 [exp] 294 / 3e-85 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 290 / 2e-83 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 282 / 9e-81 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10026270 [exp] 231 / 8e-63 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10025689 [exp] 60 / 4e-09 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 58 / 2e-08 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091700 [exp] 928 / 0 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 911 / 0 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G230300 [exp] 362 / 2e-108 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 342 / 5e-101 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 290 / 5e-83 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 285 / 2e-81 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.002G081200 [exp] 60 / 4e-09 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 59 / 4e-09 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.011G023800 [exp] 45 / 0.0002 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1) Potri.002G080100 [exp] 45 / 0.0003 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10013665 pacid=23171573 polypeptide=Lus10013665 locus=Lus10013665.g ID=Lus10013665.BGIv1.0 annot-version=v1.0 ATGATGGATGGACGGCGACATTCAGTTGACATTCCCATCTCCAGGACTCTGGTGGCGCTCAGGAGAGTTAGGTCGCTCAGAGACCCATCAACCAATTCCA TGAGTAAATTTTCTGCTGTGCTAGAAAATGTGAACTGGGAAACTAGCTCACCTAATGAAGTTTCCATAAGGTTTATGAATGACATTGCAGAAGATTCTTC TTCTCCCATTGGTTTTCCTGGTTTTCATGAGCAACACAAGGAGGATCAAGTTGCATCTGAAAATATGGAAGCACATTCTGGGCATGATAATTTCGACATG AAGCACGAGAAGGACATTTTTGAAAATCAAACTCTGATTCAAAGGTATGAAAGAGAAATGGAGCTGGAAAACGTGGATTCAGCCATTCAAGGAGAAGGTA GAGAGCAGGTTGCATTAAGAGAGAAAGCCAGGCACAAATGCAACGACATACAGGCATCTTCATTGGTAGGGGATATTTTGAGTCCCAACCTATCTATAAG TGATGCTTTCTCGAGCCGTAGTGCATCATTATATCTTGATGAAGATGCTAACTTTGGAATTCAAGGTGAACGTGGTGGATGTGGGATAACATGTTGCTGG ACTAGGACCCCGAGATTGAGAGGTGCTGAAAGCTATCCGTTACTGTCAAGGGATGTAGGAGTTGGAACAAATACAGACACTCCAAGATGTTTGAGTCAGA AGTTCAGGCCAACATCTTTTAACGATTTGGTGGGGCAAAATGTTGTGGTGAGATCTCTTATGGGTGCCATTTCTAGAGGCAGGGTAGCCTCTTTCTACGT CTTTCATGGTCCACGTGGCACTGGAAAAACCTCTGCGTCAAGGATTTTTGCAGCTGCTGTTAATTGCATCTCGCTTGAGGAGCATAAGCCATGCGGTCTT TGTCGGGAATGTCTCTTGTTTTTCAGTGGAAGGAGCCGGGATGTCCAAGAAGTAGATCCGGTGAGAGTAAACCGATCTGAACGATTTAGATCTCTTATGA AAAGTGCAGAGGGACAGCCTGTTTCATCACGATTCAAGGTTTTCATTGTTGACGAGTGCCACTTATTGCATGGAGAGACCTGGTCAATGTTTTTGAATAG CCTGGATAACCTCTCTCAACATGTTGTGTTTTTGATGATCACACCTGATCTGGATAAGTTGCCAAGAATTGCAGTAGCCAGAGCTCAAAGATATCATTTT CAAATGCTGAAAGATTCTGATATTACAATCAGGCTTAGAGATATATGCATTCAGGAGCGTCTCGACTTTGATCAAGTGGCGTTGGAATTCATTGCTGCCA AATCAAATGGTTCGCTGAGGGATGCAGAAATGATGTTGGATCAACTGAGTTTGCTTGGGAAAAGAATTACGGTGTCCCTGGTTTACGAGCTTATCGGGGT TGTTTCTGACGATGAATTGCTCGATTTGCTGGACTTAGCACTATCATCTGACACATCAAGGACAGTTATAATGGCCAGGGAGCTTATGAGTTCCAGGATT GATCCTACACAGCTTGTATCACAGTTGGCGAATCTTATCATGGACATTCTCGCTAGTAAACCCCAAGAAGATAGTTCTGAAGCCAGAAAGAGATTTTCCA AGAGTCATGCTTCTGAAGCAGACATGCAGAGATTAAGAAATGCACTAAAAATACTATCTGAAACTGAGAAACAATTGCGGATGTCGAAAAATCAAAGCAC TTGGCTAACTGTTGCTCTTCTACAATTAAGTTCTCTGGAAACATCTTCTATCGATGCAAATGATTCCAAATCATCTTGTAGGAATGTACAAGAAAGAGAT GGGGATTTTTCAAGCACATCATCTGCTGCTGCTGCTGAAAGAGAGAGTCTAAAGCATCTTGTTACTTGCTCTTGCCAAGATGGTAAGTTGGGTATAGGGA GGAACTGGGAAGCAACATTAGAATCTATATGGGATAGAGCTATACAGTTGTGCCAATCAAATTCACTAAAGAGTTTCCTAAGGAGGCAAGGGAAACTATC TGCTCTTTCAGTTAATCAAGAGCTAGCTGTTGCTGAATTAGAATTTCATCATCGCCACTCAGTATCCAAGGCCGAAAAGTCGTGGAAGTTGATAGCAAGC CTACTTCAAACAATTTTGGGTTGTAATGTGGAGATCAGGATCAACCTGGTACTCTATGCTCCCATGTCAAGGTGTGCCAGACTGCGGAAGCTTTCTTTCG GCTTGTTTAGTTGCTCTCGCAGAATTCGGGACAAGGCCAAATCACCAGTTAGATATGGAAGTGACACAACAGATTATTCTGATCTCACCTCTGAAAGGCC TATGATTGGAGACAAAGTCGTTTTGCCTTGCTCGTCTAGTTGTCATTCTCAGTTACCACCAGATCACAGGGTGGAACTGGCAAGTGCTTTGAGAAACAGC GATGGGAATGTTCTAACCATCTCAACTCAGAGATCATTACTAGAAAATGCAACAAAAACCCCTCACGAGTCTTTGCAAGAGTGGGAGAGTAAACATGAAC ATGACAGTAGGTTTGGCCAAGATCATGACAAGGATCAATCGGTTACTCTTTGTTGGAGAACTCCAGCATCCCCACTAGGCAAGGTTTGGCATCAGCGACA GAGGTCGCCCTTAGTCGGGTGGGTTCTTCCATGTGGCACAACCAAGTAG
AA sequence Show only first row Show all	>Lus10013665 pacid=23171573 polypeptide=Lus10013665 locus=Lus10013665.g ID=Lus10013665.BGIv1.0 annot-version=v1.0 MMDGRRHSVDIPISRTLVALRRVRSLRDPSTNSMSKFSAVLENVNWETSSPNEVSIRFMNDIAEDSSSPIGFPGFHEQHKEDQVASENMEAHSGHDNFDM KHEKDIFENQTLIQRYEREMELENVDSAIQGEGREQVALREKARHKCNDIQASSLVGDILSPNLSISDAFSSRSASLYLDEDANFGIQGERGGCGITCCW TRTPRLRGAESYPLLSRDVGVGTNTDTPRCLSQKFRPTSFNDLVGQNVVVRSLMGAISRGRVASFYVFHGPRGTGKTSASRIFAAAVNCISLEEHKPCGL CRECLLFFSGRSRDVQEVDPVRVNRSERFRSLMKSAEGQPVSSRFKVFIVDECHLLHGETWSMFLNSLDNLSQHVVFLMITPDLDKLPRIAVARAQRYHF QMLKDSDITIRLRDICIQERLDFDQVALEFIAAKSNGSLRDAEMMLDQLSLLGKRITVSLVYELIGVVSDDELLDLLDLALSSDTSRTVIMARELMSSRI DPTQLVSQLANLIMDILASKPQEDSSEARKRFSKSHASEADMQRLRNALKILSETEKQLRMSKNQSTWLTVALLQLSSLETSSIDANDSKSSCRNVQERD GDFSSTSSAAAAERESLKHLVTCSCQDGKLGIGRNWEATLESIWDRAIQLCQSNSLKSFLRRQGKLSALSVNQELAVAELEFHHRHSVSKAEKSWKLIAS LLQTILGCNVEIRINLVLYAPMSRCARLRKLSFGLFSCSRRIRDKAKSPVRYGSDTTDYSDLTSERPMIGDKVVLPCSSSCHSQLPPDHRVELASALRNS DGNVLTISTQRSLLENATKTPHESLQEWESKHEHDSRFGQDHDKDQSVTLCWRTPASPLGKVWHQRQRSPLVGWVLPCGTTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	2.0	0.8961
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	2.4	0.8911
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	3.9	0.8996
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	5.7	0.8556
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	6.7	0.8288
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	6.8	0.8429
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	7.3	0.8638
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	9.7	0.8701
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	10.5	0.8435
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	13.4	0.8349

Compare expression of checked genes

Lus10013665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.