Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15120 1416 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05910 296 / 1e-81 cell division cycle protein 48-related / CDC48-related (.1) AT5G03340 201 / 5e-53 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 201 / 6e-53 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 200 / 2e-52 ATPase, AAA-type, CDC48 protein (.1) AT4G29040 183 / 2e-49 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 183 / 2e-49 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G43010 174 / 9e-47 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G45000 173 / 1e-46 AAA-type ATPase family protein (.1.2) AT3G56690 177 / 1e-44 CIP111 Cam interacting protein 111 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017935 [exp] 2966 / 0 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025576 [exp] 298 / 2e-82 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10027038 [exp] 298 / 2e-82 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10037385 [exp] 201 / 1e-52 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 200 / 2e-52 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 200 / 2e-52 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 200 / 2e-52 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 199 / 3e-52 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10015524 [exp] 180 / 1e-49 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G141400 [exp] 1688 / 0 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G030900 [exp] 296 / 6e-82 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.007G127900 [exp] 296 / 7e-82 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.016G091600 [exp] 202 / 4e-53 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 201 / 7e-53 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 201 / 8e-53 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 200 / 1e-52 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 195 / 6e-51 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.002G252600 [exp] 183 / 2e-49 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 182 / 3e-49 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10013677 pacid=23169045 polypeptide=Lus10013677 locus=Lus10013677.g ID=Lus10013677.BGIv1.0 annot-version=v1.0 ATGCAATTGAAATCGTCGGCTTCTGGTTCCGCTGCTGCTGCTTCTCCGTCTAGGCTGAGTGATGTCAGCTCACCAGCGGGTTCTAGGGCAAGACCGAAGC GCAAGAGACTCGATTTGATCTGCGAAAGCGTTTATAATCAGAACCACACCGAGCCCAATGCAGGGGATGGGGCGGCAGCATCGGACCTCCGTCGTAGCTC CAGGGTTCGACGTCGGCCGGTTGTGCTTGATGTATCACCTCCGCCGGTGAAGAAGAGGAGCAAATTGGGCAAGGGCGTGAAATCTAGCGTTAAGAAGGAT GTTTCTGATGGTTCATCAACGGGTAAGAAGAAGGATGAGGAGGAGGAGGAGGAAGAGGAGAGCTTGGATGGATTGAAAACTCCAGGGAGCTGGAAATCAC ATTTAAGGGCTATGAAGAGGAATGCAAGAGGCGGGAAGAGAAAGCTGTTTGCTGAGACGATGTTAGAGGAGCGAAGTTTGTCTAAGAAAGTGGAGTCTGA TGAAGAGGAACCGGTGGCTGCAAAGACAAAGCGGTCGGCCAGGCTTAGGGCTATAAGGGGTTTAATTGAGGAGCTGAAAGATGTTGATCCGCTTTCTTCT GACGATGCAGCTGTCGAAAAGAGTGCCGATTCTGACATGGAAGATAGCGGTAAGGATCAAAGGGAGGTGACTGATGATGATGGTAGTGATAGTGATGATT CCTCATCATCTTCGGAGAGGAAGAGAAGTGGCATGAATGAGGGGAACGGCGATGTTGATGTTGATCCTCTTTCTGAACATGTGGAGATGCATGAGGAAGA GGAAAAGTGTGGGTCGGATAGTTTGAAGTCAGAGAAAAGGATTGATGGAGCTGGTACATTGGATAATGATGAGTTGAATGATGTTGAGGAGATAGTATTA GAGAATGAGAGTGAAAATGAAGAGAAAACTGCTAGGGAAACTGGTTCTTTGGATAATGAGGAGACGAATGGTGTTGAGGATATAGGATTAGAAAATGAAG GGAAAACTGCAAGGGAAAATATAGACTCCGAAGCAAGGGCAAGTGAAAGGAGCGATGATGATGGAGGACATGATATGGACGAAGTTGATAAGTTGGATGC AGATGATGACAGAAAAGCTGCTGTGGCCACAGTTGAAGAGATGCCTACGGTGGCTGAGAAACATATGAAAGAAGAGACAAGGATGGAGGGAGATTCTGTT GATATCAGTGGCTCGCCAAGGGTTAAACAGGGGAGACGATGTGGGTTGTGTGGCTGTGGTACTGATGGTAAGCCACCCAAAAGATCGGTTCAAGATGGAG GTGAGAGTGAAAAAGAGGCTTATTGTGGCTCATCGGCTTCAGAGGAGTGCAACTATGATGTATGGGATGGATTTGGGGATGAACCAGGGTGGTTAGGTCG TCTCTTGGGTCCTATAAATGACCGTTATGGTATTGCGGGAATCTGGGTTCATCAACTCTGTGCTGTATGGAGTCCGGAGGTTTATTTTGCTGGTTTGGGT TGCCTAAAAAATGTAAGAGCAGCACTCTGCAGAGGAAAAGCACTAAAATGCACCCGCTGCGGAAGGCGAGGAGCAACAACTGGCTGTCGTGTTGATCGCT GCCCAAGAACCTACCACTTGCCTTGTGCACGAGTTAGTGGCTGTATCTTTGATCATAGAAAATTTCTTATCGCATGCACTGATCACCGGCATATTTTTCA ACCTCATGGTAGTCAATTTCTAACGAGGATAAAAAAGTTGAAAGCAAAAAAAATGAAATTAGAGATCAGAAAGTTGTCCAATGATGCATGGAGAAAGGAT GTTGAAGCTGAAGAAAAGTGGTTAGAGAACTGTGGTGAAGATGAAGAGTTTCTGAAACGTGAGAGCAAGAGGCTTCATCGGGATTTGGCAAGAATCGCTC CTGAGTATATTGGAGGCTCAGGTTCTGATGGTACCAAACAATTCGAGGGTTGGGAGTCTGTTGCTGGACTTCAAAATGTCATTCAGAGTTTAAAGGAAGT TGTCATATTACCTCTGCTGTACCCTGAGTTCTTCAGTAATCTAGGGATTACTCCCCCTAGGGGGGTTCTTTTGCATGGCTATCCTGGAACTGGTAAAACT CTTGTAGTGCGTGCACTTATTGGTGCATGTGCTCAAGGAGATAAAAAGATTGCTTATTTTGCACGAAAAGGTGCCGACTGCTTGGGGAAATATGTTGGTG ATGCTGAGCGACAATTGAGACTCTTGTTTCAGGTTGCCGAGAAATGTCAGCCTTCTATAATTTTTTTCGACGAGATCGATGGTTTGGCACCCTGTCGTAC AAGGCAGCAAGATCAGACTCACAGTTCAGTTGTCTCCACATTGCTTGCTCTCATGGATGGCTTAAAATCAAGAGGCTCAGTGGTCGTGATAGGTGCAACA AATCGTCCTGAAGCTGTTGATCCAGCCTTACGTAGACCAGGGAGATTTGATAGGGAAATTTATTTTCCCCTGCCATCTGTCGAGGATAGGGCTGCCATTC TGGCTCTCCACACACGAAGATGGCCCAAACCTGTATCCGGAGCCTTACTAAAGTGGATTGCTCATGAAACTGTAGGGTTTGCTGGCGCTGATCTGCAGGC TCTCTGTACGCAAGCTGTCATCATCTCTTTGAAAAGGAACTTCCCTCTGCACAAAGTTCTGTCAGCTGCTACAAAGAAAGCTCCTGATGCTAAACGCCTT CCACTTCCATCATTTACAGTGGAGGAGAGGGACTGGTTGGAGGCTTTATCATATGCTCCACCTCCATGCTCTCGTAGAGAAGCAGGAATGGCTTCTTATG ATTTAGTATCCTCTGCTCTCCCCACTCATCTTATTCCGTGTCTGCTGTATCCATTAACAGTTTTGCTTATATCTCTCTATTTAGATGAGCGCCTCTGGCT TCCACCTCTTCTTTCTAAAGCTGGTGCGATAATTGAATCCTTAATCACTCCTTTGGCAGAGAAGAGAAATCTTCCACGAAATCAGTGGGGGTCCTACATT GACTCTCTCATTAAAGAGGCAGACTTTGGTGGGGACATACAGCAAAGGCTTTCTTGTGCTGGCATATTGGGTAGTGATGCTTATACTGAAGTCAGTAATG GGAATGACGTTGAACAGCAATCACGAATTGCTAATAGGTTTACCCGAACAAGTTTGTTCCAATCTGGAAGCATATCTTTTGCATCAGGGAAAAGGTCAGG GTTTCGGATTTTGATTGCTGGAGATACCCAATGCGGCCAGAGACATCTTGCAGCTTGTATACTTCACCTTTTCATTGGTAACGTTGAAATTTTGAAGGTT GACCTGGCAACAGTTTCCCAAGAAGGTCAGAGCGATATGGTACAAGGGATGATGCAGATATTAAAGAAATGTGCTAGCCTGCAGAAATGCATGATATACA TGCCACGAATTGATCTCTGGGCTATTGAGACTTGTCAACAGATTGATGAGAGTGATGAGTCCTCTATTCACCAACAACTTTCCTCAAAGGGAGAAGATTC TTCTCGAAATGCAGACCAGTCTTCCCATGAAATGGGTAACTCCTATACTATTGTGCGGACTGCTTCACATGCCTGGAGCTCATTCGTTGAGCAAGTGGAA TCTCTTTGTGTGTCTACATCCTTAATGATTATGGCTACTTCGGACATTCCATATCTAGAAATACCTGACAGAGTAAAGGAATTCTTTAAGAGTGACATCT CAAAGGGCAGTACTGCACTCGAGCATACTGTACCTCGGTTCTTCGTAAATGTTGAAAGGTGCTCCGACTATGAAGCAGTGATCAGTTCTTCAGCTTGGGA GTTATCACGGAATATGATACAGTTATTTGTGCAGTTGACTTATAAAAGAGCTCATGCCCTTACAAACTTATCCAAGAAGTGCAATTCATATAACATGCCC GACAATCTCTCTGCTGCAGATGACAATACGTGTAAACAGCAGGAATCAGATAAAAATGTTGGAGGACCGGATGGTCTTTCAGGTTCTTTTAGCACTGCAC CAGCACCCAATAGTAGAGGTCTAAAGGGAAAGTCAAACTTACTGCTGGCCATATCTACATTTGGCTACCAGATTTTGATATATCCACATTTTGCTGAACT CTGTTGGGTGACATCAAAGCTTAAAGATGGGCCAGTTGCAGATGTGAGTGGACCTTGGAGGATCTGGCCATTTAATAAGTGTATCGTTCGTCCTGGTAAT TCGTTGGACAAGGTTCCTGTTGTTTCTGCATCTGGAAGTATGAAAGCCAGAGACAAGTCAGGTTTCGCAAGGGGTTTAATTGCTGTTGGTTTACTAGCTT ACAGAGGTACGTACCAATCTGTTAGAGAGGTGTGCTTCGAGGTAAGGAAGGTTCTTGAGCTTCTTATGGAGCAAGTTAATGAAAAAATCCAAGCTGGAAA AGATAGGTACGTGTACGTTCGTCTGCTTTCTCAAGTGGCATATATGGAGGATATGGTCAACAACTGGGCCTATGGACTATTGAGTTTGGAGGGCAATGGT CAGATGAAATCAGCATGTCCATCGACCACTTTGGATCTTCCAAATCATAATACCGATAATCCAGTAGCGAATGGGGGCATTACGGATTGTGCTTGCGAAA TATCTGGTGAACCAGAATTACCAGAAGGCAAGCCCCAAATATCGTCTCTTGAGGATCTCAGGGGAATTGAAACAACTACAGAAGCTAATGGCTTTGATGG TCATAATTCCGACGCAAGAGCTGGGATAACAACCGATAAGTCTCCTCAGCTTATAGTTCCTGTCAATCATACTGACTCTGGGATGAACACGGAAGATGCT TCCACTGATCCAGCGGTTGGTGACAGTGGAAAGGAGAAAAATACGACAATTCATGGGCCCTCAATTGATGGAGACAAATGTGGTGCACTAAGTTCATCAA CAGAGCCTTATAACTCTTCCAAAAATGGCGGGCGCGAAAACGTTGCTCTTCAGTCCGGCCCAGGTGAATCCAATGATGGCATGTTAAAGAATGGGTCTTT GAATAGCATCCCATGTGATAATCCTAATGGTTCCCAGGAGGAGCATGGCGAGAGCATCAACTTATCTCAAGACCAGCCCGATCCCGACGAATCTGGAGTT GTATGCTTGTATCATTGCTGTGCCAGATGTGTTGAAATCCTCCGCAGCTCGATTAAGAAAATCGTTGACCGTGAAATGGAACCGCACATGAACCAGTTGG CTGCAGAGGATGTTCATGATACCTTTGCTTCTCTGTCAGTCGAGCTCCTTTCTTCGGTCAGAAAACTCGATGCCCGGTGCGAAGACGACATAACCAGCTC ATGTGAGGAGAACCAGAGACAAGAAAGCTGCAAGTGCGGAAGTTCAGGAGATATGTCTGCAACGCCCATGGAATGTAGTTTTCATTCTTCTGCTGCTAAT GCTGATAATGGACGTGCGACTGCAAACGAAGCAAGTGCTGGAATCGATCTTAGATTTGTGGTGAGAGATGGTATTCTTGTTCCTGCAGGTTCAGGATCTG ACAAAAATTTTCCCTCCTTCCATTGTAAATATGAGGCTTTGTGCCTGTGCTCTCTTGTGGAGTTGGTAGCGACAATGAAGCAGCCCTTCGGTTGA
AA sequence Show only first row Show all	>Lus10013677 pacid=23169045 polypeptide=Lus10013677 locus=Lus10013677.g ID=Lus10013677.BGIv1.0 annot-version=v1.0 MQLKSSASGSAAAASPSRLSDVSSPAGSRARPKRKRLDLICESVYNQNHTEPNAGDGAAASDLRRSSRVRRRPVVLDVSPPPVKKRSKLGKGVKSSVKKD VSDGSSTGKKKDEEEEEEEESLDGLKTPGSWKSHLRAMKRNARGGKRKLFAETMLEERSLSKKVESDEEEPVAAKTKRSARLRAIRGLIEELKDVDPLSS DDAAVEKSADSDMEDSGKDQREVTDDDGSDSDDSSSSSERKRSGMNEGNGDVDVDPLSEHVEMHEEEEKCGSDSLKSEKRIDGAGTLDNDELNDVEEIVL ENESENEEKTARETGSLDNEETNGVEDIGLENEGKTARENIDSEARASERSDDDGGHDMDEVDKLDADDDRKAAVATVEEMPTVAEKHMKEETRMEGDSV DISGSPRVKQGRRCGLCGCGTDGKPPKRSVQDGGESEKEAYCGSSASEECNYDVWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQLCAVWSPEVYFAGLG CLKNVRAALCRGKALKCTRCGRRGATTGCRVDRCPRTYHLPCARVSGCIFDHRKFLIACTDHRHIFQPHGSQFLTRIKKLKAKKMKLEIRKLSNDAWRKD VEAEEKWLENCGEDEEFLKRESKRLHRDLARIAPEYIGGSGSDGTKQFEGWESVAGLQNVIQSLKEVVILPLLYPEFFSNLGITPPRGVLLHGYPGTGKT LVVRALIGACAQGDKKIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT NRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILALHTRRWPKPVSGALLKWIAHETVGFAGADLQALCTQAVIISLKRNFPLHKVLSAATKKAPDAKRL PLPSFTVEERDWLEALSYAPPPCSRREAGMASYDLVSSALPTHLIPCLLYPLTVLLISLYLDERLWLPPLLSKAGAIIESLITPLAEKRNLPRNQWGSYI DSLIKEADFGGDIQQRLSCAGILGSDAYTEVSNGNDVEQQSRIANRFTRTSLFQSGSISFASGKRSGFRILIAGDTQCGQRHLAACILHLFIGNVEILKV DLATVSQEGQSDMVQGMMQILKKCASLQKCMIYMPRIDLWAIETCQQIDESDESSIHQQLSSKGEDSSRNADQSSHEMGNSYTIVRTASHAWSSFVEQVE SLCVSTSLMIMATSDIPYLEIPDRVKEFFKSDISKGSTALEHTVPRFFVNVERCSDYEAVISSSAWELSRNMIQLFVQLTYKRAHALTNLSKKCNSYNMP DNLSAADDNTCKQQESDKNVGGPDGLSGSFSTAPAPNSRGLKGKSNLLLAISTFGYQILIYPHFAELCWVTSKLKDGPVADVSGPWRIWPFNKCIVRPGN SLDKVPVVSASGSMKARDKSGFARGLIAVGLLAYRGTYQSVREVCFEVRKVLELLMEQVNEKIQAGKDRYVYVRLLSQVAYMEDMVNNWAYGLLSLEGNG QMKSACPSTTLDLPNHNTDNPVANGGITDCACEISGEPELPEGKPQISSLEDLRGIETTTEANGFDGHNSDARAGITTDKSPQLIVPVNHTDSGMNTEDA STDPAVGDSGKEKNTTIHGPSIDGDKCGALSSSTEPYNSSKNGGRENVALQSGPGESNDGMLKNGSLNSIPCDNPNGSQEEHGESINLSQDQPDPDESGV VCLYHCCARCVEILRSSIKKIVDREMEPHMNQLAAEDVHDTFASLSVELLSSVRKLDARCEDDITSSCEENQRQESCKCGSSGDMSATPMECSFHSSAAN ADNGRATANEASAGIDLRFVVRDGILVPAGSGSDKNFPSFHCKYEALCLCSLVELVATMKQPFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15120			P-loop containing nucleoside t...		Lus10013677 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	2.2	0.9203
AT3G01160			unknown protein		Lus10028412 [exp]	10.8	0.8113
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	13.2	0.8714
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043452 [exp]	13.9	0.8492
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	15.9	0.8764
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	16.2	0.8726
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	16.5	0.8736
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10032141 [exp]	19.5	0.7797
AT2G29210			splicing factor PWI domain-con...		Lus10004983 [exp]	32.7	0.8306
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	32.9	0.8612

Compare expression of checked genes

Lus10013677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.