Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 274 / 1e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 269 / 1e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72840 256 / 1e-73 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41750 256 / 2e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G16890 256 / 7e-73 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G11250 253 / 3e-72 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 244 / 6e-69 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44480 243 / 9e-69 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72860 243 / 1e-68 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 239 / 7e-68 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 545 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 533 / 2e-176 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 367 / 3e-114 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039211 [exp] 322 / 3e-107 AT5G45050 105 / 2e-26 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10014829 [exp] 292 / 3e-87 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 285 / 4e-83 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 283 / 2e-82 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 281 / 4e-82 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000121 [exp] 253 / 5e-77 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070700 [exp] 370 / 4e-114 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 365 / 2e-113 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 353 / 2e-108 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 356 / 5e-108 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 352 / 2e-106 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 339 / 2e-105 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 348 / 3e-105 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 347 / 8e-104 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T002568 [exp] 317 / 6e-101 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G010800 [exp] 325 / 7e-98 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10013729 pacid=23169052 polypeptide=Lus10013729 locus=Lus10013729.g ID=Lus10013729.BGIv1.0 annot-version=v1.0 ATGCTCTGGTACTACCTCCTCCTCCTAATCCATCTCTCCGTCTTCCTCACCCAAATCATCCTCCACTTCACTCGCCGACGCGCCACCACAACGGGAACCT CATCCCCGCCGCCGGTCAACGACGACGAATCCGATTCCTCCGCCGAAGTGGTCCACAAGTACGACGTGTTCCTGAGCTTCAGAGGAGCGGACACCAGGGA CAACTTCACCAGCCACCTCTACTCCGCGCTGCAGGGGCGCCGCGTCCTCACCTACATCGATGACGTCCGCCTCCGGCGAGGAGAGGACATCTCCGACTCG CTGCTGAAGGCGATCGAGGAGTCGAAGATGGCGGTGGTCGTGTTCTCGGAGAACTACGCGGATTCCGGGTGGTGCCTTGACGAGCTGGTGCAGATAATGC GGTGCCGGAAGCGGTTCGGGCAGGTCGTTTACCCGGTTTTCTTTCGGGTGGATCCTTCAGATGTTGCGGAACAGAGGAGGAGCTACGCGGCGGCGATGAA CAAGCACCGGAAGTCGGCGTTGACTAAGGGTAAAGTCGGGATTTGGAGGAATGCTTTGGTGGCAGCTGCCGATCTCTCCGGCTGGGATTCTCTTGTCATT AAGAGTGAGGCAGAACTAGTGAGAACGATCGTATCGAACATCTTAACGACGTTAAATCAAATGGCCCCATCTCTTCAATTTACGGGCCTGGTCGGAGCAG ATTCTCGAGTGAAAGAAATTGAATCCTTGTTGAGTATGGATTCATCATCATCGTCCTCGTCGTCCGATAGTACTCAGATCATTGGAATATGGGGGATGGG CGGGATGGGAAAAACCACACTCGCCCGAGCCATATTCGACCAATTCTCGAACCAATTCGAAGGCTCCCACTTCCTCGCAGACATCAGGAGACAACTTGAA AAGGGGTCGTCAACCGAACTCCGTCTACAGCAAGAGCTCTTTTCGAGCATCCTCGACGACCACGACTTGGGCGCTCGAAGCTACACAAAAGTGGCCACCA CGGCCATTTCCAAGAACCGCCTCAGTCGTACGAAAACCTTCGTGGTCCTCGACGATGTCGATGAGCCGATAACGCTCCACAACTTACTGGACAAGCAGCC TCGGACCGTGTTCGGTCCCGGGAGCAGAATCTTGGTGACAAGTAAGGATCACCAGGTTCTGAAGATAGTATGCGACGAAATCTACGAAGTCAAGGGTTTG GACGAGGACGAATCTCTAGAGCTCTTTGTTTTGACCTGGTTTGGCAGGTGGAAAGCTGGATGGAATAATTTAGACAGCAATTATGATAAGTGTTCAGTTC ACCCCTCAAAATCACTTTGTCTAATTGCTGCTGAAAATTCCATCCAACTTTCCACCTGCCAAACCAGACCTTCGAATTCGAATGTCATTGTTGTAGCCGA CGATGATGATTGTCCGGAAGAGCACTATATCAAGCTGTCGAAGAAGGTCGTTAACTACACGGGAGGGAATCCGTTAGCGATTATTATTTTCGGAAAGGCT CTGAAAGGTAGGAGCAGAGAATATTGGGAGAGTACATTGTTCAGACTGCAGAGGATACCGAACGAGAGGATACAGAGGATGTTGAAAGCGAGCTTCGAGA GGCTGGATTGCGACGAGAAGAACGGGTTCCTCAACATTGCTTGTTTCTACAAGGGAGAGAGTAAGGAGTATGTGAAGTCGAGATTGGATGGTGCTTATGG GTATGGATCTTCGGAGTACATCATAACTTCCCTCGCCGACAAATCCTTGGTGAGGGTTACGGGCGATGAGAGGCTTGAGATGCACGGTTTGGTGCAGGAA ATGGGGCGCAGGATTGTCAACGAGGATTCTGATTCCGACGATGGTAATGCTGATGCTGTTGGAGTGCGTAGCAGGTTGTTGCTAACCAATACTACTGGTT CTCCTCTTTTGATAGAAGATGTTGTGAATTAG
AA sequence Show only first row Show all	>Lus10013729 pacid=23169052 polypeptide=Lus10013729 locus=Lus10013729.g ID=Lus10013729.BGIv1.0 annot-version=v1.0 MLWYYLLLLIHLSVFLTQIILHFTRRRATTTGTSSPPPVNDDESDSSAEVVHKYDVFLSFRGADTRDNFTSHLYSALQGRRVLTYIDDVRLRRGEDISDS LLKAIEESKMAVVVFSENYADSGWCLDELVQIMRCRKRFGQVVYPVFFRVDPSDVAEQRRSYAAAMNKHRKSALTKGKVGIWRNALVAAADLSGWDSLVI KSEAELVRTIVSNILTTLNQMAPSLQFTGLVGADSRVKEIESLLSMDSSSSSSSSDSTQIIGIWGMGGMGKTTLARAIFDQFSNQFEGSHFLADIRRQLE KGSSTELRLQQELFSSILDDHDLGARSYTKVATTAISKNRLSRTKTFVVLDDVDEPITLHNLLDKQPRTVFGPGSRILVTSKDHQVLKIVCDEIYEVKGL DEDESLELFVLTWFGRWKAGWNNLDSNYDKCSVHPSKSLCLIAAENSIQLSTCQTRPSNSNVIVVADDDDCPEEHYIKLSKKVVNYTGGNPLAIIIFGKA LKGRSREYWESTLFRLQRIPNERIQRMLKASFERLDCDEKNGFLNIACFYKGESKEYVKSRLDGAYGYGSSEYIITSLADKSLVRVTGDERLEMHGLVQE MGRRIVNEDSDSDDGNADAVGVRSRLLLTNTTGSPLLIEDVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	2.4	0.8472
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	4.9	0.8563
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	11.0	0.8358
AT1G03290			unknown protein		Lus10012381 [exp]	14.3	0.8133
					Lus10012594 [exp]	14.3	0.7881
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	17.7	0.8297
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	22.8	0.8248
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	23.4	0.8321
AT2G19130			S-locus lectin protein kinase ...		Lus10039762 [exp]	24.5	0.7750
AT5G03380			Heavy metal transport/detoxifi...		Lus10021516 [exp]	25.7	0.8322

Compare expression of checked genes

Lus10013729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.