Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13620 524 / 0 Amino acid permease family protein (.1) AT3G19553 279 / 8e-89 Amino acid permease family protein (.1) AT5G05630 266 / 1e-83 Amino acid permease family protein (.1) AT1G31830 257 / 4e-80 Amino acid permease family protein (.1.2) AT1G31820 248 / 7e-77 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039180 [exp] 693 / 0 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 476 / 9e-166 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 474 / 4e-165 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 271 / 8e-86 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10040966 [exp] 271 / 2e-85 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 270 / 4e-85 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10007593 [exp] 270 / 2e-82 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 261 / 6e-82 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10020320 [exp] 49 / 1e-05 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007300 [exp] 542 / 0 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 457 / 2e-158 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G296100 [exp] 267 / 6e-84 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.003G103600 [exp] 257 / 3e-80 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.009G090300 [exp] 253 / 1e-78 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.004G178000 [exp] 247 / 1e-76 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.013G065000 [exp] 47 / 2e-05 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 46 / 6e-05 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.019G039700 [exp] 45 / 0.0001 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10013757 pacid=23169102 polypeptide=Lus10013757 locus=Lus10013757.g ID=Lus10013757.BGIv1.0 annot-version=v1.0 ATGAATTCTCCTTCCACACCAGCAAAAACAAAAACTTATTCACCACAGTCACACTCTGCCTCCGCCGCCGCCGGCATGGCTGAAATATCCTCGCCAACAG CAAACCATCAGCTCCCCACAACAGTCAACAAGAAGACGACTCCGATTACGAAGAAGAAGCAGCTGACTCTCCTCCCTCTGATTTTCCTAATCTACTTCGA AGTCGCCGGCGGCCCTTACGGTGAAGAGCCCGCCGTCCAAGCCGCCGGACCACTCTTCGCCATCCTCGGATTCCTGACTCCTTGGATTCCTGATCTTCCC CTTCATCTGGAGTATCCCGGAAGCTCTCATCACTGCCGAGCTCTCCACCGCATATCCCGGAAACGGCGGGTTCGTGATCTGGGCCGATCGGGCTTTCGGA CCCTTCTTCGGATCCATGATGGGCTCGCTGAAATTCCTCAGCGGAGTCATCAACGTCGCCGCCTTCCCCGTCCTCTGCATCGACTATTTGAAGAAGGATT AGCAATTGTGGGTTATTTCGCAGTGTTTCTGGGGATCGTCTCCCTCTCACCATTCGTGATCATGTCGATCATGGCGCTCCCGAAGATCAAACCGAAAAGA TGGATCAGCTTGGGCGACAAAGGAGTGAAAAAGGACTGGAATTTATACTTCAACACTCTGTTCTGGAACTTAAACTTCTGGGACAGCGTCAGCACTCTAG CCGGAGAAGTCGAGAAGCCAGGCAAAACATTCCCACTCGCATTGTTCATAGCCGTGATCTTCACCTGCGTGTCGTACTTAATCCCTCTATTCGCGGTCAT CGGCGCGGTCTCGGTGGACCAATCCGCTTGGGAATCGGGTTTCCACGCGACGGCAGCCGAGATCATAGCAGGGAAGTGGCTCAAGTACTGGCTCGAAATC GGGGCTGCATTGTCAGCCGTCGGATTGTTCGAGGCCCAGCTCAGCAGCTGCGTGTACCAGCTGTTGGGCATGGCCGAACTGGGCAGTCTGCCAAGCTTCT TCGCCCTGCGGTCGAAGTGGTTCAACACCCCCTGGGTCGGGATCGTGGTCTCGACAGCGATCACAATCGCGTGCTCGTACATGGAGTTCGAGGACATTGT CTCGTCTGCGAATTTCCTCTACACTCTGGGGATGTTGTTGGAGTTCGCGTCATTTTTGTGGCTGAGGAAGAAGCTGCCAGGGCTGAAGAGGCCGTACCGG GTTCCGTTGAAGCTCCCCGGGTTGGTGGTGATGTGTTTGGTGCCGTCGTGTTTTCTGGTGATCATTGTTGTTGTGGCTAACAAGACTGTGTATCTGGTGA GTGGGCTCATGACTGTTGGTGCTGTTGGATGGTATTATCTGATGAATTTCTGTAAGTCGAAGAAGGTTTTTGCATTCAGCGATGGCCAGCAAGACTGTGA TGATGAAGATGATGAATGA
AA sequence Show only first row Show all	>Lus10013757 pacid=23169102 polypeptide=Lus10013757 locus=Lus10013757.g ID=Lus10013757.BGIv1.0 annot-version=v1.0 MNSPSTPAKTKTYSPQSHSASAAAGMAEISSPTANHQLPTTVNKKTTPITKKKQLTLLPLIFLIYFEVAGGPYGEEPAVQAAGPLFAILGFLTPWIPDLP LHLEYPGSSHHCRALHRISRKRRVRDLGRSGFRTLLRIHDGLAEIPQRSHQRRRLPRPLHRLFEEGLAIVGYFAVFLGIVSLSPFVIMSIMALPKIKPKR WISLGDKGVKKDWNLYFNTLFWNLNFWDSVSTLAGEVEKPGKTFPLALFIAVIFTCVSYLIPLFAVIGAVSVDQSAWESGFHATAAEIIAGKWLKYWLEI GAALSAVGLFEAQLSSCVYQLLGMAELGSLPSFFALRSKWFNTPWVGIVVSTAITIACSYMEFEDIVSSANFLYTLGMLLEFASFLWLRKKLPGLKRPYR VPLKLPGLVVMCLVPSCFLVIIVVVANKTVYLVSGLMTVGAVGWYYLMNFCKSKKVFAFSDGQQDCDDEDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	2.0	0.9443
AT5G41810			unknown protein		Lus10001907 [exp]	5.3	0.9439
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	6.9	0.9386
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	7.3	0.9427
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	8.1	0.9320
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	11.2	0.9030
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	13.4	0.9320
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	13.4	0.9182
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	14.7	0.9288
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	15.2	0.9260

Compare expression of checked genes

Lus10013757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.