Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 231 / 5e-76 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT3G61250 189 / 1e-58 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G38620 186 / 6e-58 MYB AtMYB4 myb domain protein 4 (.1) AT5G54230 186 / 1e-57 MYB ATMYB49 myb domain protein 49 (.1) AT2G16720 184 / 2e-57 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G21440 186 / 4e-57 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 183 / 2e-56 MYB ATMYB107 myb domain protein 107 (.1) AT4G09460 181 / 2e-56 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 181 / 3e-56 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G05100 181 / 1e-55 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039173 [exp] 406 / 1e-144 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10030378 [exp] 188 / 3e-58 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10009448 [exp] 184 / 4e-57 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10014784 [exp] 184 / 4e-57 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10000411 [exp] 183 / 1e-56 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 182 / 3e-56 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 182 / 3e-56 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10018418 [exp] 183 / 4e-56 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10028435 [exp] 179 / 7e-56 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005100 [exp] 235 / 2e-76 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056500 [exp] 233 / 9e-76 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.003G219900 [exp] 232 / 3e-75 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.013G056400 [exp] 229 / 2e-74 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.019G036400 [exp] 228 / 8e-74 AT3G13540 236 / 3e-77 myb domain protein 5 (.1) Potri.019G036160 [exp] 227 / 1e-73 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.019G036340 [exp] 227 / 2e-73 AT3G13540 240 / 6e-79 myb domain protein 5 (.1) Potri.002G173900 [exp] 199 / 7e-63 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.014G100800 [exp] 195 / 2e-61 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.005G112000 [exp] 185 / 7e-58 AT4G38620 277 / 5e-94 myb domain protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013762 pacid=23169059 polypeptide=Lus10013762 locus=Lus10013762.g ID=Lus10013762.BGIv1.0 annot-version=v1.0 ATGAGAAACCCTGCATCGTCGGAACAGAGGACGGCGGCGGCGAAGGTCGGGGCGATAAAGAGGGGGCCGTGGACGGCGGAGGAAGATGAGATCCTGTCCG GGTACATAAATCGAGAAGGGGAAGGGCGGTGGCGGACGCTGCCGAAACGGGCGGGGTTGCTCCGGTGCGGGAAGAGCTGCCGGCTGAGGTGGATGAATTA CCTCCGGCCGTCCGTGAAACGCGGCCACATCACCGCTGACGAGGAAGACCTCATCCTCCGCATGCACCGCCTCCTTGGCAACAGGTGGTCGTTGATAGCG AGAAGAATACCTGGACGAACGGACAATGAGATAAAGAACTATTGGAACACGCACCTGAGCAAAAAGCTGATCAGCCAAGGGATTGATCCCACCACCCACA AGCCATACATCCCTTCCATGATCAACAAGCCTCCTCCTTCAACTTCTGCTAAATCATCATCATCATCCTTATTACTACCACCTGAACCTCCAAGTTTGAG AAGCAAAAGATTCATCACCTATGAACATCAGCAGCAGCAAGCAGGGGAAGATGCAGTACTGGCTCATACGATAAGAAACGACATTGTGGTCGAGAGAGGA GAAGACGATGATGAGGATTACGATCATGTCGGAACAGCCCGAGATATGATGATGGCTAATAACAATGTCGACCAAGTACTTAAACGTGAGGAGGAGGAGG AGGATGCTGCATTCTCTTCTTTCCTCAACTCCCTCATCAATGAAGAAGGAGATGTTTACATAACTAATTCTACTTCTGCTTCTTCCGCTTCTCCAAACCC GATCGATATGTGA
AA sequence Show only first row Show all	>Lus10013762 pacid=23169059 polypeptide=Lus10013762 locus=Lus10013762.g ID=Lus10013762.BGIv1.0 annot-version=v1.0 MRNPASSEQRTAAAKVGAIKRGPWTAEEDEILSGYINREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHITADEEDLILRMHRLLGNRWSLIA RRIPGRTDNEIKNYWNTHLSKKLISQGIDPTTHKPYIPSMINKPPPSTSAKSSSSSLLLPPEPPSLRSKRFITYEHQQQQAGEDAVLAHTIRNDIVVERG EDDDEDYDHVGTARDMMMANNNVDQVLKREEEEEDAAFSSFLNSLINEEGDVYITNSTSASSASPNPIDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10013762 [exp]	0	1
AT3G28880			Ankyrin repeat family protein ...		Lus10005246 [exp]	1.4	0.9419
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10030800 [exp]	1.7	0.9340
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	2.2	0.9312
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	2.2	0.9486
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	2.6	0.9265
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	6.5	0.9274
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	11.8	0.9338
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	25.3	0.9139
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	33.6	0.9123
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	39.1	0.9131

Compare expression of checked genes

Lus10013762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.