Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 102 / 2e-25 AP2_ERF RAP2.11 related to AP2 11 (.1) AT5G18560 66 / 5e-12 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT4G23750 64 / 2e-11 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 63 / 3e-11 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT1G28370 61 / 3e-11 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT5G13910 62 / 4e-11 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G44210 61 / 6e-11 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT4G27950 62 / 1e-10 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G39780 61 / 1e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G28160 61 / 2e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039171 [exp] 449 / 4e-160 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10012703 [exp] 94 / 4e-21 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10013614 [exp] 91 / 7e-21 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10010652 [exp] 87 / 2e-19 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10001298 [exp] 81 / 1e-18 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10041372 [exp] 79 / 9e-18 AT5G19790 102 / 1e-27 related to AP2 11 (.1) Lus10036556 [exp] 76 / 6e-17 AT5G19790 104 / 2e-28 related to AP2 11 (.1) Lus10036793 [exp] 81 / 7e-17 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 81 / 1e-16 AT5G19790 116 / 2e-29 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220200 [exp] 142 / 3e-40 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 96 / 9e-23 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.001G004700 [exp] 94 / 3e-22 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.019G036100 [exp] 85 / 1e-18 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.008G091300 [exp] 84 / 5e-18 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.017G087800 [exp] 84 / 8e-18 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.001G453100 [exp] 81 / 6e-17 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.014G076702 [exp] 76 / 1e-15 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 74 / 8e-15 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.011G148900 [exp] 74 / 1e-14 AT5G19790 65 / 5e-12 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10013764 pacid=23169084 polypeptide=Lus10013764 locus=Lus10013764.g ID=Lus10013764.BGIv1.0 annot-version=v1.0 ATGGCTACCAAATTGAAAGTAGTGGGGAGGAAGAACACGATGAGCACCAAGAGCAAGTATATCGGAGTCCGGCAGAGGCCGTCTGGCAAATGGGTGGCCG AGATCAAGGACACCACTCAGAAGATCAGAATGTGGCTCGGCACATTCGATACAGCGGAGGATGCTGCTCGTGCCTACGACGAGGCTGCCCGCCTTCTCCG TGGCTCGAACACCCGAACCAACTTCAACCTCAGCAACCATAACCATAGTAATGTACTTTTCCCCTACTCACAGATTTCGACCAAGATTCGGAACCTCCTC CACCGCCGAAGAGCAAACATTAATAAACCAAACTCCATAGCCATTCCTGTTCCTCCATCAATCTGCTTGCCCACCAAAACCCAATTTCTCAACTTCCAAA CCCATAACACAATTGGTACTAGTAGCAGTTTTAGTACTAGAAACACAATAGGTACCAGTAACAGTACTTATAGTACTAGTAACACAATTAGTACTAGTAC CAGTATTAGTAATTCGCCTTCTTCGCCGAGTTCCCCTGCCTTTTCTGTCCCCCAAGAGAGGAACTTTGAAGTGTTTGGAGATGCTTACAAGCCAGATGTG CAATCAATCTCCAATCCACCATTCCAATTTCTGCCATCTGGGTTCTCCTTCCAGGACGAGGAGCTTTCGAGTATGCAGCATCAACAGCAAGAAGTTGATG TTCGGTTGGTGAGTTCTGCTTGTGGTGAAGAACACGGTGAGCTGCCGAAGTTCGAGAGGATGAAGGTGGAGAGGCAGATTTCGGCATCTATTTACGCGAT GAACGGATTGAACGAGTGTATAATGCAGCAACAATATCATCATCCGACTGGGTTTGGTGGTGGTGGTGGTGATCATCATGGCAGTAATTTGTGGGATTTC CCAGCACTCTGCTCCGTTCTCTCTGATTCCTTCTCGTTTCCTAATGACTTGTTCAAAGTCTAA
AA sequence Show only first row Show all	>Lus10013764 pacid=23169084 polypeptide=Lus10013764 locus=Lus10013764.g ID=Lus10013764.BGIv1.0 annot-version=v1.0 MATKLKVVGRKNTMSTKSKYIGVRQRPSGKWVAEIKDTTQKIRMWLGTFDTAEDAARAYDEAARLLRGSNTRTNFNLSNHNHSNVLFPYSQISTKIRNLL HRRRANINKPNSIAIPVPPSICLPTKTQFLNFQTHNTIGTSSSFSTRNTIGTSNSTYSTSNTISTSTSISNSPSSPSSPAFSVPQERNFEVFGDAYKPDV QSISNPPFQFLPSGFSFQDEELSSMQHQQQEVDVRLVSSACGEEHGELPKFERMKVERQISASIYAMNGLNECIMQQQYHHPTGFGGGGGDHHGSNLWDF PALCSVLSDSFSFPNDLFKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013764 [exp]	0	1
AT4G32060			calcium-binding EF hand family...		Lus10040000 [exp]	5.2	0.6085
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010467 [exp]	16.2	0.4778
					Lus10007169 [exp]	20.0	0.4891
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10014259 [exp]	21.9	0.5486
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10037796 [exp]	22.3	0.5079
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030411 [exp]	23.2	0.4667
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	25.4	0.4769
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	32.4	0.4626
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	34.0	0.4626
					Lus10022511 [exp]	35.5	0.4626

Compare expression of checked genes

Lus10013764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.