Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 160 / 3e-43 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 155 / 1e-41 GRAS RGL2 RGA-like 2 (.1) AT1G66350 154 / 3e-41 GRAS RGL1 RGA-like 1 (.1) AT5G17490 153 / 5e-41 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 153 / 2e-40 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G50420 129 / 1e-32 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G55580 126 / 1e-31 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G41920 122 / 1e-30 GRAS GRAS family transcription factor (.1) AT3G46600 120 / 1e-29 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 119 / 2e-28 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039166 [exp] 801 / 0 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016897 [exp] 288 / 3e-91 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 285 / 5e-90 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 264 / 8e-82 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016891 [exp] 253 / 5e-79 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10037756 [exp] 249 / 1e-77 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10018100 [exp] 249 / 2e-77 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016894 [exp] 236 / 7e-73 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10016892 [exp] 235 / 3e-72 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143700 [exp] 309 / 3e-99 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 290 / 4e-92 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 281 / 8e-89 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143500 [exp] 280 / 2e-88 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 255 / 2e-79 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 237 / 5e-73 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 226 / 5e-68 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 162 / 1e-43 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 159 / 8e-43 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 158 / 3e-42 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10013767 pacid=23169127 polypeptide=Lus10013767 locus=Lus10013767.g ID=Lus10013767.BGIv1.0 annot-version=v1.0 ATGGACAACATCAACAACTCCAGTACTCATGATCAACATCAAGCCAGATCCACCGTTGATCCATTCATATGTTACTTCAACTACCTGTCCAACCAACAAC AAGAAGTCGCTTTCTCCAAGATCAACCCTCTTCATGATCATGATCATCATCAACTATCGTCGGAGGAGATCATTCGAATAGCGGGGGCACGATTCCTTAA CGACGACGATGATGATTCCTTGTCGGAGGAAGACACCAAGAAGGTGGATCTAATCGAGCTACTCATAGCTGCTTCCCACAAAGTAGATGTTCAAGAGTAC GACCAAGCAGCCACCTTGCTCCAAAAATGCAATACATCATCCGATGGTGGAGATTCTTCAATCCAGAGGTTGGTTTCCTACTTCTCCCAAGCCCTTTTGG ACCGGATCAATTCCCAATCACCTGGAATAATCATGGATGATCCTGCAACGTTTATGATAAGTTCATGTCTCCCAACGGTGTTGGTTTCGCAATTCTGTGG AATTCAAGCCATCGTTGATGAAGTGAACGGTGTGAAAAGGGTCCACGTCATCGACCTCTTTTCGATCCGGAGTGGTGCTCAATGGACAATCTTGATCTCA GCCCTAGCTTTGTCTGACCGATCGATTCGGGTTTTGAAGCTCACGGCGGTTGGATTAATATCCGATAGCGACTATGATCGCGATCAAAACACGATTGAAG AGACTGGCAATAAGTTGGAGAGTTTCGCCGAGACGTTGGATTTCCCCTTCTCTTTTCGTGCTATTATGGTATCAGAGCTCAACGATCTTAACCAGGACAT GTTATTAACTCTACATGATGACTACGGGGACGACGAGGATGATGAAGAGGAAGGAGAAGCGATGGTTGTGTACTTAGAGTATGTGCCAAGGAAGCTAATA ATGTCGTCACCATCTACCGAATTTGACAAGTTGATGGAAGTTGTCAAGGGCATAAACCCTAGAATCATGGTGGTGAGCGAAATCGAGGCGAACCACAACT CCTCAGCCTTTGCATACCGGTTCATGGAGGCGTTATTCTTCTTCGGCGCATATTTCGAGTGCATCGAGGCGTGCATGGATAATGGAGAAACAAAGAGGGC GGAAGTGGAAGCAATGTGGTGTGGGGAGAGCATAAGGAGCATTGTTGCGTTCGAGGGAGAGGAAAGGGCGGTTAGGAACGTGCCTCTCCGAGGTTGGAGG ATGTTCTTTGAACGATTTGGAATGGAAGAGATAGAAATCGGGTCGAATTGTTTGGAGCAAGCCAAGGTTGTGATTGATAATGTTGTTGGTTGTGAGGGTT TGTGTACGGTTGAGATGGACGAGAAGAGCTTGGTGGTTGGGTGGAAAGGTATGCCTTTGCATTCGGTTTCAGCTTGGAAGTTCATTGGTACTTAG
AA sequence Show only first row Show all	>Lus10013767 pacid=23169127 polypeptide=Lus10013767 locus=Lus10013767.g ID=Lus10013767.BGIv1.0 annot-version=v1.0 MDNINNSSTHDQHQARSTVDPFICYFNYLSNQQQEVAFSKINPLHDHDHHQLSSEEIIRIAGARFLNDDDDDSLSEEDTKKVDLIELLIAASHKVDVQEY DQAATLLQKCNTSSDGGDSSIQRLVSYFSQALLDRINSQSPGIIMDDPATFMISSCLPTVLVSQFCGIQAIVDEVNGVKRVHVIDLFSIRSGAQWTILIS ALALSDRSIRVLKLTAVGLISDSDYDRDQNTIEETGNKLESFAETLDFPFSFRAIMVSELNDLNQDMLLTLHDDYGDDEDDEEEGEAMVVYLEYVPRKLI MSSPSTEFDKLMEVVKGINPRIMVVSEIEANHNSSAFAYRFMEALFFFGAYFECIEACMDNGETKRAEVEAMWCGESIRSIVAFEGEERAVRNVPLRGWR MFFERFGMEEIEIGSNCLEQAKVVIDNVVGCEGLCTVEMDEKSLVVGWKGMPLHSVSAWKFIGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10013767 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031808 [exp]	9.5	0.5424
AT1G67623			F-box family protein (.1)		Lus10030128 [exp]	11.8	0.5415
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	17.2	0.5315
					Lus10030783 [exp]	19.9	0.5315
					Lus10022108 [exp]	22.2	0.5315
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	24.4	0.5315
					Lus10010826 [exp]	26.3	0.5315
					Lus10003272 [exp]	28.1	0.5315
					Lus10036152 [exp]	29.8	0.5315
					Lus10037861 [exp]	31.5	0.5315

Compare expression of checked genes

Lus10013767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.