Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03260 343 / 2e-113 LAC11 laccase 11 (.1) AT2G37210 263 / 7e-87 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 259 / 3e-85 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G28305 253 / 1e-82 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT5G06300 247 / 2e-80 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT5G58910 236 / 3e-72 LAC16 laccase 16 (.1) AT2G35990 225 / 5e-72 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT4G35190 223 / 5e-71 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G38080 230 / 9e-70 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G11950 205 / 3e-64 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026512 [exp] 423 / 2e-144 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 380 / 1e-127 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 374 / 4e-125 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10026513 [exp] 299 / 1e-100 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10023190 [exp] 268 / 1e-88 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10002226 [exp] 267 / 3e-88 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 258 / 1e-84 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 253 / 1e-82 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10017175 [exp] 252 / 2e-78 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156400 [exp] 346 / 2e-114 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.007G023300 [exp] 342 / 5e-113 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.009G102700 [exp] 326 / 1e-106 AT5G03260 881 / 0.0 laccase 11 (.1) Potri.006G127400 [exp] 273 / 1e-90 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.016G090500 [exp] 268 / 1e-88 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 258 / 6e-85 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 254 / 2e-83 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.005G237600 [exp] 244 / 4e-79 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 242 / 1e-78 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G204800 [exp] 239 / 1e-77 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10013800 pacid=23159494 polypeptide=Lus10013800 locus=Lus10013800.g ID=Lus10013800.BGIv1.0 annot-version=v1.0 ATGGAGCTTGTAGAGAGTGAAATTATAAGGCAATCGCCTTCCCCCCTTTCCCGTTTCAAGAGGATTTGTGTCTTCTGTGGGAGTAGTCAGGGGAAGAAGA GTAGCTATCAGGATGCTGCTATTGAGCTTGGCCAAGAGTTGGTTTCAAGGAACATTGATCTGGTGTATGGTGGGGGTAGCATAGGTCTGATGGGTTTAGT CTCGCAAGCAGTTCATGATGGGGGTCGTCATGTTATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTAACTGGGGAGACAGTTGGGGAAGTGAAG GCAGTTGCAGACATGCATCAAAGGAAGGCAGAGATGGCTAAACGTTCAGATGCCTTTATTGCCTTGCCAGGTGGCTATGGGACTCTGGAAGAACTGCTTG AAGTCATAACCTGGGCTCAACTTGGAATTCATGACAAACCTCACAGTCACAAATTATATAAGATATATATTGTATATGGTATTCGAGGCAGAATACTCAT ATACGTTCTCGTCAGGGCTGACCAAATTCCTGACAGGTATTTCATGGCCGCTAAGCCTTTTATGGATGTGCGGGTTCCTGTAGAAAACAAAACAGTGTCG GCGATTCTTCAATACAAAGGAATCTCGACGACAATCCTTCCGAAGCTTCCTACATTACTAGCCTCCAATGACACGAAATTCGCCTTGGCTTACGCTGGCA AGCTCAGGAGTCTCAACACCGCTCAGTTCCCGGCTATTGTAAAGGTCAACCGGAAATTGTTCTACACCATCGGATTGGGGGAAAATCCATGCGCAACCTG CCAGAACGGCACGAAGATTTCGGCATCACTGAACAACATAACGTTCGTGATGCAGAAAACCGATCTGCTCCAGGCACATTACTTCAACATGTCGGGAGTT TTCAAAACCGATTTCCCCGATCGACCCTCGAAGACTTTTAACTATACCAGAGTTCCTCTCACTGCGAATCTCGCAACTTCCTTAGGCACAAGGCTGAGGA GGATCCCTTTCAATACGACGGTCGAATTGGTGCTTCAAGATACGAATCTCTTGACTGTTGAATCCCACCCTTACCATCTCCATGGTTACAACTTTTTTGT TATCGGAACAGGAATCGGTAATTTTGATCCTGCCAAGGATCCTGCTAAGTATAACCTGGTGGATCCTTCAAAACGGAACACAGTCCAACTGGAGGATGGA CTGCTATCAGGTTTAGAACTGATAATCCCGACGTCTGGTTCATACACTGTCACTTAG
AA sequence Show only first row Show all	>Lus10013800 pacid=23159494 polypeptide=Lus10013800 locus=Lus10013800.g ID=Lus10013800.BGIv1.0 annot-version=v1.0 MELVESEIIRQSPSPLSRFKRICVFCGSSQGKKSSYQDAAIELGQELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVK AVADMHQRKAEMAKRSDAFIALPGGYGTLEELLEVITWAQLGIHDKPHSHKLYKIYIVYGIRGRILIYVLVRADQIPDRYFMAAKPFMDVRVPVENKTVS AILQYKGISTTILPKLPTLLASNDTKFALAYAGKLRSLNTAQFPAIVKVNRKLFYTIGLGENPCATCQNGTKISASLNNITFVMQKTDLLQAHYFNMSGV FKTDFPDRPSKTFNYTRVPLTANLATSLGTRLRRIPFNTTVELVLQDTNLLTVESHPYHLHGYNFFVIGTGIGNFDPAKDPAKYNLVDPSKRNTVQLEDG LLSGLELIIPTSGSYTVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	0	1
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	6.7	0.8046
					Lus10029627 [exp]	8.9	0.7983
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	9.1	0.8172
AT1G54680			unknown protein		Lus10018965 [exp]	9.6	0.8180
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	12.8	0.7675
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019831 [exp]	14.5	0.7321
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10002226 [exp]	16.2	0.7449
AT3G13480			unknown protein		Lus10010318 [exp]	16.6	0.7536
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	17.3	0.7781
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	17.5	0.7646

Compare expression of checked genes

Lus10013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.