Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03280 593 / 0 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) AT1G15960 139 / 4e-34 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 131 / 1e-31 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT4G18790 119 / 1e-27 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT1G47240 118 / 3e-27 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT5G67330 114 / 5e-26 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT2G23150 112 / 2e-25 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026516 [exp] 2531 / 0 AT5G03280 628 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013804 [exp] 1925 / 0 AT5G03280 1076 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 1875 / 0 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10024069 [exp] 133 / 6e-32 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 133 / 6e-32 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10018132 [exp] 124 / 4e-29 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10010395 [exp] 120 / 5e-28 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 120 / 5e-28 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10004317 [exp] 114 / 7e-26 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090800 [exp] 787 / 0 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.006G127100 [exp] 763 / 0 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.002G080400 [exp] 139 / 3e-34 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181000 [exp] 138 / 1e-33 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 137 / 2e-33 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 134 / 2e-32 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.002G121000 [exp] 115 / 2e-26 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.007G050600 [exp] 110 / 6e-25 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050700 [exp] 110 / 7e-25 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.002G080500 [exp] 74 / 3e-13 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10013803 pacid=23159475 polypeptide=Lus10013803 locus=Lus10013803.g ID=Lus10013803.BGIv1.0 annot-version=v1.0 ATGGATACAGACACTGGAAATGTCCATATACCAGTTGTTCTCCGGAGGCTACTTCCTGCTGTTGGACCGGCGCTTTTGATTTCAGTTGCGTATGTTGACC CTGGGAAGTGGGCAGCCACCGTGGAAGGTGGTGCTCGTTTTGGAATTGATCTGGTCTTGCCAATGCTCATTTTTAATTTGGCAGCAATGCTGTGCCAGTA CCTGTCCGCTAAAGTTGGTATTATCACCGGTAGAGATCTGGCTCAGATTTGCAGTGAGGAGTATGACAAGGGAACATGCATGCTCTTGGGAATTCAAACA GCAGTTTCAGTGATGGCATTGGACCTCAGCATGGTACTTGGCATTGCACATGGGCTTAATCTTCTTCTGGGGCTGGACTTGCCCACCTGTATCTTTTTGA CTGCTGTGGATGCTGTATTATTTCCATTTTTCGGTGCCTTTCTGGAGAAACACAAGGGATATTACCCATCCATATGTGTGGCAGGCTCTTTGTTACTCTT CTATTTTCTCGGGGTGCTCATTAGTCAACCAGAGATTCCTCTTTCATTGAATGGGATGCTGATGAAGTTAAGCGAGGAAAGTGCATTTGCTCTGATGAGT CTTCTTGGTGCAAGCATTATGCCTCACAATTTCTATATGCATTCTTCCATTGTTCTGCATCATCCGCGATCTCCCAATGTTTCTAAGAGTTCCTTGTGCT ATGACAGCTTTTTTGCCATTTTATGCATCTTTAGTGGCATATATTTGGTGAACTATGTGCTCATGAACTCGGCTGCGAATGTTTTCCACAGTACTGGCCT TGTTTTGGTTACTTTTCCGGATGCTTTGTCACTAATGGAGCAGGTGTTTCGCAGTCCAGTGGCACCCTTGTTCTTTGTAGTGATTTTGTACCTTTCGAAT CAAATCTCAGCATTAACTTGGAACCATGGCGGGCAAGTAGTTGTGCATGATTTCCTCCTACTTGACATACCTAACTGGCTCCAGCGAGCTACAACCAGGA TTGTTGCGATTGTTCCAGCCCTTTATTGTGTATGGACTTCTGGAGTTGAAGGAGCATACCAGTTGCTCATATTTTCTCAAGTTATGGTAGCCCTTCTACT ACCATCTTCTGTCATTCCACTATTCCGGGTAGCATCATCAAGGGCCATAATGGGTGCCCATAAAATATCTCAAATCCTAGAGTTCTTGGCAGTTATCACA TTCATGGGGATGCTAGGGTTGAAGATCATATTTGTGGTAGAAATGATTTTCGGGGATAGTGATTGGATCGGCAATTTGCAATGGAATATGGGCAGCAGTT CGTCTGTCCCTTATGTTGTTCTTATTCTTACGGCTGTTACGTCATTCTGTTTGATGCTTTGGCTAGCAGCCACACCTTTGAAATCTGCGACCGCTACCCA TACAGACGCTCAGACCTGGACCTGGGATGCAAAGCAAACTTTGCCCGAGCCAGCCATGCGCAGAGATGAAACTTATTTAGGTGAGACTAGGTATGAAGGA GAAATGCATGCTGATCCAGTGAAGCCGTTTGACAGTTACACAGATAGAAGTATTTTACATGCTGATCCACATTTACCTGAAACTATTTTGGATTCTCACA AGGATCTTCATTTGAGACCTGTAGCAGAAAATCATTCTGATGTGAAATTTTTGAGTCTTCTGAGACCAAATCAGTCTGATATGACGCTTCCTAGTCCTCC GGAACCAAATCAGTCTGATATGAAGCTTCCTAGTCCTCTGAGACCAAATCAGTCTGATATGAAGCTTCCAAGTCCTCTGATACCAAATCAGTCTGATATG AAGCTTCCAAGTTCTCTGAGACCACAGCAGTCTGATCTGAAGCTTCCGAGTCCTCCAAGACCAAATCAGTCTGATCTGAAGCTTCCTAGCCCTCTGGAAC CAAATCTGGAATCTGCACCTTCAGTAGAGCCAGTGTCAGTGCCAAAGGCAGAAAATTTAGCTGTTACTGAATTTGATTTACCGGACTCGAAGATGAAGGT TGAATCACTTGAACCAATCGAAAAGACTGTGAGCATGGAAGGTGATTTACTGCCAGAAAAGGAGCATGACAAGGTAGAATCGTGGGAGCCTGAAGAGCTC TCCAAAGGAGTTCCTGGGACTGTTTCATCTTTCACATCTGATGGTCCATCATCATTCAGGAGTCTCAGTGGAAAAAGCGACGATGGGGGAAATGGTGCTG GAAGTCTTTCAAGACTGGCAGGGCTTGGTAGGGCTGCAAGACGTCAATTAGCTACAGTTCTTGATGAATTCTGGGGACAGTTGTATGATTTCCATGGTCA AGCAACCCAGGACGCCAAGAATAGAAGACTTGATCTGTTACTTATCGATCCAAAGCTTTCGTTTTCCTTCCTGAAAGTTGACCCTCCTTCAACCGAATAC AATGGGTATCCATCTAGAACAGCCGGTAAAGGATCTGAATCTTTCATGGGTTCAAGTTTCTGTGATTCTCCCCGGCAGGTGATGCTGCAGAGCACTCTCG ACTCTCCATATAATGGGGGTCGAAGTGGACCTTCCTCGTTATTATCCACCCGCTCTCAGTTACTTGATAAATATTCTTTACCCAGCTCGAGCGTGGTGGA CCCTTTTGAGAGGCGGTATTCTAGTGTGCGAAATCTACCATCTACTGATGGTTGGGGAAATAGTCAGCCAGCTACAAATGTGATGGACCCTTCTGAAAGG CGTTACTCAAGTGTGCGAAATCTACCATCTTCTGATGGTTGGGGAAATACTCTGCCATCTACGAATGTGATGGACCCTTCTGAAAGGCGTTATTCTAGTG TGCGAACTTTACCATCTTCTGATGGTTGGGGTAATGCTCAGCCAGCTACAATCCATGGTTATCAGATTGCTTCCATTGCTAACCGGATTGCCAAGGAGAG GAGTTCCAGTGGCTTGAATGGTGGAATAGAACCCATGTCGCCAACTTATTCAGCCATGGGCATGCAGAGTTACAGGGATCCACAAGCAAGTGCTTTGGGG CAGAGAATACAGAGTGGATTGAGCTCCCCAGGATATCAGAATTTCGCAGTATCCAGAAATAGCCCATTACAGTCTGAAACACAATACTACGATGTTGATT CGGCTTCTGCTAACAATGGAGGCCAGACAACCAATACAAAGAAGTACCACAGTTTGCCTGACATTTCAGGAATTGCTGGGCCTTACAGAGAGCTATATCT ATCCAGAAAACTTACTCAGCGCGACAATTCTGGTGGTTTTGCTTCCTCCTTAGGGAGAACGAGTTACGAGTCTTCTTTGTATCCAAATACCGGATCAGGA AATGCAAGTTCTTTGGGTTTTGATGACATTGGCACAAGTTATGGAGATGCTTTCGCATTTCCTACAACAGCTGTTACTACTACTAGTACAGCTGGAGCAG GATCTCTTTGGTCCAGACAGCCCTTTGAGCAGTTTGGTGTTGGGGATAAAAACCGTACAGTTGTGAGTGCTGTAGGAAGTAGTAGGTCTAATCCGATTTC TCGTGAAGCTAGTTCGATAGTGGATGGAGAGGCGAAACTTCTTCGGTCCTTCAGATGCTGCATTGTCAAGCTACTGAAACTGGAAGGCTCGGATTGGTTG TTCAGGCAGAATGATGGAGCTGATGAGGACTTGATTGATCGTGTGGCCGCACGTGAGAAGTGCTTATACGAAGCTGAGGCGAGAGAGATGGGCGGCCAGG GGGTTCACTTGGGTGAGTCTCAATCCAGCAGCGATAAGAAGCAGAAGAATGACGAGGCCAGCATTGCTAGTATCTTGGTTTCGTCAATTCCTCACTGCGG AGAAGGCTGTGTTTGGAGGGCGGATTTGATTGTCAGCTTTGGAGTTTGGTGCATTCACAGGATTCTCGATTTGTCGCTAATGGAAAGCCGGCCTGAGCTA TGGGGGAAGTATACCTATGTACTCAATCGCCTTCAGGGGATTGTGGAGCCGGCATTCTTGAGACCAAGGACTCCAATGCAGCCATGCTTCTGCTTGCAAC TCTCTGCAGCGCACCAGCAGAGGTTGTTGGCCCAGCCACCATCGAACAACGGTATGCTACCACCCACTGCGAAACCAGGGAAAGGGACATGCACAACTGG GGCAATGGTCCTGGAGATGATCAAGGATGTCGAGATAGCGATTTCGTGCAGGAAAGGCCGGTCGGGGACTGCTGCCGGAGATGTTGCATTCCCAAAAGAT GTAGCTTTCCCAAAGGGAAAAGAGAACCTGGCGTCCGTCCTGAAACGGTACAAGCGACGGCTTTCAAACAAGAAATGA
AA sequence Show only first row Show all	>Lus10013803 pacid=23159475 polypeptide=Lus10013803 locus=Lus10013803.g ID=Lus10013803.BGIv1.0 annot-version=v1.0 MDTDTGNVHIPVVLRRLLPAVGPALLISVAYVDPGKWAATVEGGARFGIDLVLPMLIFNLAAMLCQYLSAKVGIITGRDLAQICSEEYDKGTCMLLGIQT AVSVMALDLSMVLGIAHGLNLLLGLDLPTCIFLTAVDAVLFPFFGAFLEKHKGYYPSICVAGSLLLFYFLGVLISQPEIPLSLNGMLMKLSEESAFALMS LLGASIMPHNFYMHSSIVLHHPRSPNVSKSSLCYDSFFAILCIFSGIYLVNYVLMNSAANVFHSTGLVLVTFPDALSLMEQVFRSPVAPLFFVVILYLSN QISALTWNHGGQVVVHDFLLLDIPNWLQRATTRIVAIVPALYCVWTSGVEGAYQLLIFSQVMVALLLPSSVIPLFRVASSRAIMGAHKISQILEFLAVIT FMGMLGLKIIFVVEMIFGDSDWIGNLQWNMGSSSSVPYVVLILTAVTSFCLMLWLAATPLKSATATHTDAQTWTWDAKQTLPEPAMRRDETYLGETRYEG EMHADPVKPFDSYTDRSILHADPHLPETILDSHKDLHLRPVAENHSDVKFLSLLRPNQSDMTLPSPPEPNQSDMKLPSPLRPNQSDMKLPSPLIPNQSDM KLPSSLRPQQSDLKLPSPPRPNQSDLKLPSPLEPNLESAPSVEPVSVPKAENLAVTEFDLPDSKMKVESLEPIEKTVSMEGDLLPEKEHDKVESWEPEEL SKGVPGTVSSFTSDGPSSFRSLSGKSDDGGNGAGSLSRLAGLGRAARRQLATVLDEFWGQLYDFHGQATQDAKNRRLDLLLIDPKLSFSFLKVDPPSTEY NGYPSRTAGKGSESFMGSSFCDSPRQVMLQSTLDSPYNGGRSGPSSLLSTRSQLLDKYSLPSSSVVDPFERRYSSVRNLPSTDGWGNSQPATNVMDPSER RYSSVRNLPSSDGWGNTLPSTNVMDPSERRYSSVRTLPSSDGWGNAQPATIHGYQIASIANRIAKERSSSGLNGGIEPMSPTYSAMGMQSYRDPQASALG QRIQSGLSSPGYQNFAVSRNSPLQSETQYYDVDSASANNGGQTTNTKKYHSLPDISGIAGPYRELYLSRKLTQRDNSGGFASSLGRTSYESSLYPNTGSG NASSLGFDDIGTSYGDAFAFPTTAVTTTSTAGAGSLWSRQPFEQFGVGDKNRTVVSAVGSSRSNPISREASSIVDGEAKLLRSFRCCIVKLLKLEGSDWL FRQNDGADEDLIDRVAAREKCLYEAEAREMGGQGVHLGESQSSSDKKQKNDEASIASILVSSIPHCGEGCVWRADLIVSFGVWCIHRILDLSLMESRPEL WGKYTYVLNRLQGIVEPAFLRPRTPMQPCFCLQLSAAHQQRLLAQPPSNNGMLPPTAKPGKGTCTTGAMVLEMIKDVEIAISCRKGRSGTAAGDVAFPKD VAFPKGKENLASVLKRYKRRLSNKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	0	1
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	1.0	0.9699
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	8.5	0.8395
AT3G44330			unknown protein		Lus10013307 [exp]	9.0	0.8655
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	10.2	0.8380
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	11.1	0.8549
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	11.5	0.8428
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	12.2	0.8145
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	15.8	0.8543
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	16.8	0.8504
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	19.9	0.8152

Compare expression of checked genes

Lus10013803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.