Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03280 1007 / 0 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) AT1G15960 140 / 2e-34 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 132 / 8e-32 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT1G47240 115 / 3e-26 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT4G18790 114 / 4e-26 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT5G67330 113 / 9e-26 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT2G23150 109 / 2e-24 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026517 [exp] 2266 / 0 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013803 [exp] 1895 / 0 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026516 [exp] 1879 / 0 AT5G03280 628 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10041652 [exp] 129 / 8e-31 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10024069 [exp] 129 / 9e-31 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10010395 [exp] 118 / 3e-27 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 117 / 6e-27 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10018132 [exp] 117 / 6e-27 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10028542 [exp] 114 / 7e-26 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090800 [exp] 1369 / 0 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.006G127100 [exp] 839 / 0 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.002G080400 [exp] 133 / 3e-32 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 130 / 2e-31 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.005G181000 [exp] 130 / 3e-31 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 130 / 3e-31 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 130 / 4e-31 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G121000 [exp] 116 / 1e-26 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.007G050700 [exp] 108 / 2e-24 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050600 [exp] 107 / 7e-24 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10013804 pacid=23159469 polypeptide=Lus10013804 locus=Lus10013804.g ID=Lus10013804.BGIv1.0 annot-version=v1.0 ATGAATTCAGAATCTGGAAATGCTAACCATATATTGGGTGTTCTTGGGAGGCTTCTTCCTGCCGTTGGACCCACGCTATTGATTTCAGTAGCATATGTTG ACCCTGGGAAGTGGGCAGCCACTGTGGAAGGTGGTGCCCGTTTTGGATTCGATCTGATCCTGCCAATGCTCATTTTTAATTTGGCAGCAATATTGTGCCA GTATCTGTCCGCTAAAGTCGGTATTGTCACTGGTAGAGATCTTGCTCAGATTTGCAGTGAGGAGTATGACAAGGGAACATGCATGCTCTTGGGAATTCAA GCGGCAGTTTCAGTGATGGCATTGGACCTCAGCATGGTACTTGGAATTGCACATGGGCTTAATCTTCTTCTGGGGCTGGACTTGCCCACCTGCATATTTT TGACTGCTGTGGATGCTGTATTATTTCCATTTTTCGGTGCCTTTCTGGACAAACACAAAGGATATTACCCATCCATATGTGTGGCAGGCTCTTTGTTACT CTTCTATTTTTTGGGGGTGCTCATTAGTCAACCAGAGGCTCCTCTTTCATTGAATGGAATGCTGATGAAGATAAGCGAGGAAAGTGCATTTGCTCTGATG AGTCTTCTTGGTGCAAGCATTATGCCTCACAATTTCTATATGCATTCTTCCATTGTTCTGCATCATCCTCGATCCCCCAATGTTTCTAAGAGCACCTTAT GCTATGAAAACTTCATTGCCATTTTATGCATCTTTAGTGGCATATATATGGTGAATTATGTGCTCATGAACTCAGCTGCTAATGTGTTCCACAGTACTGG CCTTGTTTTGCTTACATTTCCGGATGCATTGTCACTCATGGAGCAGGTGTTTCGCAATCCAGTGGCACCCTTGTTCTTTGTAGTGATTTTGTATCTTTCG AGTCAAATCTCATTATTAACTTGGAATCATGGCGGGCAAGTAGTTGTGCATGATTTCCTCCTACTTGACGTACCTAACTGGCTCCAGCGAGCCACAACCA GAATTGTTGCCATTGTTTCGGCACTTTGTTGTGTATGGACTTCTGGAGTTGAAGGAGCATACCAGTTGCTCATATTTTCTCAAGTTATGGTAGCCCTTCT GCTACCATCTTCTGTCATTCCACTATTCCGTGTGGCATCATCGAAGGCCATAATGGGCGGCCATAAAATATCTCAAGTCCTGGAGTTCTTGGCAGTTATC GCATTCTCGGGGATGCTGGGATTGAAGATGATGTTTGTGGTAGAAATGATTTTCGGGGATAGTGATTGGGTCGGCGATTTGCAGTGGAATATGGGCAGCA GTTCATCTCTCCCTTATGTTGTTCTTATTCTAACGGCTTTTACATCATTCTGTTTCATGCTTTGGCTAGCAACTTCACCGTTGAAATCTGCAACCCATAA AGACGCTCAGGCATGGAACTGGGATTCAAAGCAAAGTTTGTCCAAGCCATCTGTACGTAGAGATGAAGAAAGGTATGTTCATAAGCAAGAAGCGGTACCA GTCCTCGTGAAGCCCTTTGAGGATAGAACTGTTGTAAATGCTGATCCACATTTACCTGAAACTGGTTTGGATTTTCGCAAGGATATTCGTTCGAGAACTG TAGTAGAAAATCAGTCTGATGTGAAAATTTTGAATCCTCTGAGACCAGATCAGTCTGATGTGAAATGTCTGAGTCCTCTGAGACCAGATCAGTCTGATGT GAAAAATCTGAGTCCTCTGAGACCAGATCAGTCTGATATGAAGCTTCCTAGTCCTGTGGAACCAAATCTGGAGTCGGCACCTTCAGTAGAGCCGATGTCA GTGTCAAAGGCAGCAAATTTAGCTGTTACTGAACTTGAATTACTTGAACCTATTGAAAAAACTGTGAGCATGCACGGTGATCCTTGTGAACCAGAAAAGG AGCAAAACAAGGGAGTTACCTGGGAGCCTGAAGAGCCATCCAAAGGGATTCCTGCGAGTATTCCATCTTTGACATCTGATGGTCCATCATCATTCAGGAG TCTCAGCGGAAAAAGCGACGATGGTGGATATGGTGCTGGAAGTCTTTCAAGATTGGCAGGGTTGGGTAGGGCTGCCAGACGTCAATTAGCTACAGTTCTG GATGAGTGCTGGGGCCAGTTGTATGATTTCAGGGGTCAAGAAACGCAGGATGCCAAGAATCGAAGGCTCGATCTGTTACTTATTGATTCAAAGCTTTCAT TTTCCTGCCTGAAAGTTGACTCTCCTATAATGGAAGGATCTGGATCTTTCAGGAGTTCAAGTTTCTGTGATTCTCCTCGTGATTATGGTGCTCGAGGAGG ATCTTACTCGTTATTATCCAACCGCTCTCACTTACTAGATTCACTTTCTGTAGCCAGCTCGGGTATGGTGGATCCTTCTGAAAGGCGGTATTCTAGTCTG CGAACTTTATCGTCTGCTGATGGTTGGGGGAGTACGCAATCAGCTGCAGTACCTGTGATGGACCCTTCTGAAAGGCAGTATTCTAGTTTGCGAAATCTAC CATCTTCTGATGGTTGGGGATATGGTCAGCCAGCCACGAATGTGATGGACCCTTCTGAAAGGCGTTACTCAAGTGTACGAAATTTACCATCTTCTGATGG TTGGCAGAATACTCAGGCAGCTAGAAATGTGATAGACACTTCTGAAAGGCGTTATTCTAGTTTGCGAACACTAGCATCTTCTGATTATCAGATTGCTTCC ATTGCTAACCGGATTGCCGAGGAGAGGAGTTCCAGTGACTTGAATGGCGGAATGGAATCTATGTCGCCAATTTCTTCAGCCATGGGTATGCAGAGTTACA GGGATCCACTGGCAAGTCCTTTGGGGCAGAGATTACAGAGCGGATTAAGCTCTCTACAAGCAACGGGATATCAGAATTTCGCAGTATCCAGAAATAGCTC ATTACAGTCTGAAACACAGTACTATTATGCAGGACAGACGACTGCTTCAAAGCAGTACCACAGTTTACCTGACATTTCAGGAATTGCTGGGCCTTACAGA GAGATGTTTCTATCTAGAAACCCTACTCAGCCGGACGGTTCTGGTGGTTTTACTTCCTCCTTGGGCAGAACGGCTTACGAGAACTCCTCTTTGTATCCAA ATACCGGAATAGGAAATGCAAGCTCTTTGGAGTTTAACAACGTGTCCAGAAGTTATGGAGGTGTTTTTCCATTTCCTACAACCACTACTAGTACTACTAC CACAGGCACAGGATCTCTTTGGTCCTCGTCTAATCCGATTGCTCGTGAAGCTAGTTCCATTGTGGATGCGGAGGCGAAACTTCTTCGGTCTTTCAGATCC TGCATTGTCAAGCTACTGAAACTGGAAGGCTCGAATTGGTTGTTTAGACAGAACGATGGAGCTGACGAGGACTTGATTGATCGTGTGGCTGCACGTGAGA AGTTCTTATACGAAGCTGAGGTGAGAGAGATGGCCCCGAAGAATGATGAGAAGCACAGTTCCTCCCCGAAGAACGATGAGGCCAGCATCGCCAATATCTT CGTTTCTTCAATTCCTCACTGCGGAGATGGCTGTGTTTGGAAGGCGGATATGATAGTTAGCTTTGGAGTTTGGTGCATTCACAGGATTCTCGATTTGTCG CTAATGGAAAGCCGGCCCGAGCTATGGGGGAAGTACACCTATGTCCTCAATCGCCTTCAGGGGATTGTGGAGCCGGCATTCTTGAGACCAAGGACTCCAA TGCAGCCATGCTTCTGCCTGCAACTCTCTGCAGGGCACCAGCAGAGGTTGTTGGCCCAGCCACCATCGAACAACGGTATGCTACCACCCATTGCGAAACC AGGGAAAGGGATATGCACAACTGGGGCAATGGTCCTAGAGATGATCAAGGATGTCGAGATAGCGATTTCGTGCAGGAAAGGCCGGTCGGGGACTGCTGCC GGGGATGTTGCATTCCCAAAGGGAAAAGAGAACCTGGCATCGGTCTTGAAACGGTACAAGCGACGCCTTTCGAACATGCCGGTGGGGAAGTGA
AA sequence Show only first row Show all	>Lus10013804 pacid=23159469 polypeptide=Lus10013804 locus=Lus10013804.g ID=Lus10013804.BGIv1.0 annot-version=v1.0 MNSESGNANHILGVLGRLLPAVGPTLLISVAYVDPGKWAATVEGGARFGFDLILPMLIFNLAAILCQYLSAKVGIVTGRDLAQICSEEYDKGTCMLLGIQ AAVSVMALDLSMVLGIAHGLNLLLGLDLPTCIFLTAVDAVLFPFFGAFLDKHKGYYPSICVAGSLLLFYFLGVLISQPEAPLSLNGMLMKISEESAFALM SLLGASIMPHNFYMHSSIVLHHPRSPNVSKSTLCYENFIAILCIFSGIYMVNYVLMNSAANVFHSTGLVLLTFPDALSLMEQVFRNPVAPLFFVVILYLS SQISLLTWNHGGQVVVHDFLLLDVPNWLQRATTRIVAIVSALCCVWTSGVEGAYQLLIFSQVMVALLLPSSVIPLFRVASSKAIMGGHKISQVLEFLAVI AFSGMLGLKMMFVVEMIFGDSDWVGDLQWNMGSSSSLPYVVLILTAFTSFCFMLWLATSPLKSATHKDAQAWNWDSKQSLSKPSVRRDEERYVHKQEAVP VLVKPFEDRTVVNADPHLPETGLDFRKDIRSRTVVENQSDVKILNPLRPDQSDVKCLSPLRPDQSDVKNLSPLRPDQSDMKLPSPVEPNLESAPSVEPMS VSKAANLAVTELELLEPIEKTVSMHGDPCEPEKEQNKGVTWEPEEPSKGIPASIPSLTSDGPSSFRSLSGKSDDGGYGAGSLSRLAGLGRAARRQLATVL DECWGQLYDFRGQETQDAKNRRLDLLLIDSKLSFSCLKVDSPIMEGSGSFRSSSFCDSPRDYGARGGSYSLLSNRSHLLDSLSVASSGMVDPSERRYSSL RTLSSADGWGSTQSAAVPVMDPSERQYSSLRNLPSSDGWGYGQPATNVMDPSERRYSSVRNLPSSDGWQNTQAARNVIDTSERRYSSLRTLASSDYQIAS IANRIAEERSSSDLNGGMESMSPISSAMGMQSYRDPLASPLGQRLQSGLSSLQATGYQNFAVSRNSSLQSETQYYYAGQTTASKQYHSLPDISGIAGPYR EMFLSRNPTQPDGSGGFTSSLGRTAYENSSLYPNTGIGNASSLEFNNVSRSYGGVFPFPTTTTSTTTTGTGSLWSSSNPIAREASSIVDAEAKLLRSFRS CIVKLLKLEGSNWLFRQNDGADEDLIDRVAAREKFLYEAEVREMAPKNDEKHSSSPKNDEASIANIFVSSIPHCGDGCVWKADMIVSFGVWCIHRILDLS LMESRPELWGKYTYVLNRLQGIVEPAFLRPRTPMQPCFCLQLSAGHQQRLLAQPPSNNGMLPPIAKPGKGICTTGAMVLEMIKDVEIAISCRKGRSGTAA GDVAFPKGKENLASVLKRYKRRLSNMPVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	0	1
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	4.6	0.7990
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	5.3	0.7596
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	5.7	0.7722
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	6.9	0.7663
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	10.5	0.7584
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	13.9	0.7036
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	17.0	0.7009
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	17.5	0.7366
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	20.1	0.7129
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	21.2	0.7049

Compare expression of checked genes

Lus10013804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.