Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37025 96 / 4e-24 TRFL8 TRF-like 8 (.1.2) AT1G72650 87 / 2e-20 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 82 / 6e-19 MYB TRFL3 TRF-like 3 (.1.2) AT1G07540 59 / 1e-10 MYB TRFL2 TRF-like 2 (.1) AT5G59430 57 / 3e-10 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G46590 57 / 4e-10 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT3G53790 56 / 5e-10 MYB TRFL4 TRF-like 4 (.1) AT5G13820 55 / 2e-09 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G12560 54 / 4e-09 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G58340 48 / 4e-07 MYB myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026522 [exp] 290 / 2e-98 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2) Lus10015664 [exp] 86 / 5e-20 AT1G72650 335 / 9e-107 TRF-like 6 (.1.2) Lus10037678 [exp] 84 / 1e-19 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2) Lus10000947 [exp] 57 / 6e-10 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10010844 [exp] 56 / 6e-10 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10002704 [exp] 56 / 7e-10 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 56 / 9e-10 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10040285 [exp] 55 / 3e-09 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040795 [exp] 50 / 1e-07 AT1G07540 400 / 1e-132 TRF-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126300 [exp] 106 / 2e-27 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.001G170200 [exp] 87 / 1e-20 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 82 / 5e-19 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G086500 [exp] 60 / 4e-11 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.001G241600 [exp] 59 / 7e-11 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.008G057300 [exp] 57 / 3e-10 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.009G032000 [exp] 56 / 6e-10 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.010G202400 [exp] 56 / 8e-10 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.006G147400 [exp] 44 / 7e-06 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.002G005600 [exp] 43 / 2e-05 AT5G03780 94 / 1e-20 TRF-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013809 pacid=23159446 polypeptide=Lus10013809 locus=Lus10013809.g ID=Lus10013809.BGIv1.0 annot-version=v1.0 ATGGCTTTTTCTTACTCTCCTTGCTTACTCTCCTTGCTTACTCTCCAGGATCTGAAACCAGACGACCTATATACTTCATCGGAGTCTGAAGATGGACGTA AGAACAAGACATTGGGATGTAAGAACAGAAGGAAGCATCACGTCATGTGGACTACTGCTGAGGTTTCTAACCTGATTGAAGGTGTGGCACAGTACGGAAT CGGGAGATGGACCGACATCAAGAAGTTTCATTTCTCGTCCTCTACTCATCGCACGCCTATTGATATCAGGGACAAATGGCGAAACCTTGTGAAATCCAGC CGTAACCAGAAGAGATGGAATCAAGGGGTTGATCAGAGGCAGCCGTCCAGGCTTGTGTTGTCGGAAGCTCAGATGGGACGTGTCGTGGAACTGGCGACTA TTCACGTGAGGAACAATAAGAAGTGA
AA sequence Show only first row Show all	>Lus10013809 pacid=23159446 polypeptide=Lus10013809 locus=Lus10013809.g ID=Lus10013809.BGIv1.0 annot-version=v1.0 MAFSYSPCLLSLLTLQDLKPDDLYTSSESEDGRKNKTLGCKNRRKHHVMWTTAEVSNLIEGVAQYGIGRWTDIKKFHFSSSTHRTPIDIRDKWRNLVKSS RNQKRWNQGVDQRQPSRLVLSEAQMGRVVELATIHVRNNKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10013809 [exp]	0	1
					Lus10013810 [exp]	1.0	0.8855
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	7.7	0.8460
AT1G06980			unknown protein		Lus10006211 [exp]	9.6	0.8568
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	13.4	0.8698
AT4G35980			unknown protein		Lus10028436 [exp]	17.5	0.8499
AT3G52230			unknown protein		Lus10038643 [exp]	18.4	0.8287
AT3G18430			Calcium-binding EF-hand family...		Lus10010775 [exp]	24.5	0.8207
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	26.1	0.8344
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	30.9	0.7827
AT5G64816			unknown protein		Lus10009081 [exp]	32.6	0.8285

Compare expression of checked genes

Lus10013809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.