Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36960 661 / 0 MYB TKI1 TSL-kinase interacting protein 1 (.1.2.3) AT4G39380 134 / 4e-33 unknown protein AT2G46830 43 / 0.0009 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026528 [exp] 1304 / 0 AT2G36960 526 / 4e-178 TSL-kinase interacting protein 1 (.1.2.3) Lus10010230 [exp] 196 / 2e-59 AT2G36960 68 / 2e-14 TSL-kinase interacting protein 1 (.1.2.3) Lus10033530 [exp] 159 / 4e-42 AT4G39380 216 / 2e-64 unknown protein Lus10020841 [exp] 55 / 5e-08 AT4G39380 99 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125400 [exp] 912 / 0 AT2G36960 680 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.016G091700 [exp] 896 / 0 AT2G36960 665 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.005G086800 [exp] 173 / 1e-47 AT4G39380 245 / 2e-76 unknown protein Potri.007G077700 [exp] 170 / 2e-46 AT4G39380 245 / 2e-76 unknown protein Potri.008G210200 [exp] 43 / 0.0008 AT2G47820 375 / 4e-117 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013816 pacid=23159424 polypeptide=Lus10013816 locus=Lus10013816.g ID=Lus10013816.BGIv1.0 annot-version=v1.0 ATGGAGCCATTGGTATCCTTGGGCTCTCAGGCACTCCTTCATACAGAGACTGCAGTTCAGGATCAAAGTCCTTGTGTTCTGTCATCCACTCCGGATCACG TTGAACCACAACTGCCTGTGAAAAAGAAAACCAGGCAGTGGGCTGCTTGGACACGTCAAGAGGAGGAAAGGTTCTTTACTGCACTGCGACAATTTGGCAA GAATTTTGAGAAGATCACTAATCGTGTCCAGAGTAAAAACAAAGATCAGGTCCGGCATTATTACTATCGTTTGGTGAAGCGTATGAACAAATATCTTGGT CCTGCACTGTGTCTGGATGCTAAGAATTCTAAAGATACCAATGCTGCAATGCTTCGATGGTGGTCATTATTGGAGAAATACAGCTGCAAAGCCTCAAAGC TTCACCTGAAGCCACGGAGATTCAAGATTTTCTTAGAGGCCTTGGAGAACCAATTGATAAAAGACCGAAAAAAGAACGAAAGAAAGCGGCCTTTGCAAGG AGAAAGTGCTTCTCCAATAGCGACCAGCTCTGTTACCAAACAGAATAGAGCATCAGCTCAAGGTGCTGTGATGGTTAAACTGGTTCTCATAGACGGTCAA AACATACAAAAGTTAGGATCCAGTAAAGGATCACTGAGGCGCAATGCTAGTGTAGGTGTCATGCGGAATACCAATAAGGGGTCCCCTGGGTTGATGAAAC CTCCTCGACAAAAGCGGAAACAAAGTGCAGTCACTCCAGCTGCATACCGAAAGTGGGAAAAGGCTGCTATTGCTGGGGTTTCATTGGTTGCTGATGCTGC TGAGCATTTGGAGCGGACAGCAATTGATAAGGATGTGAATGCTGACCAGGCAGAAGGGGGTCTTGACCCTGTTGATAAAGAATTAGTCCCTCTTCCGGTT TCTTCACATCACCAGACTGGTGATAGCAATGTCTGCAGTAATATGAAGCTTAAGCTTCAGTTCTTCCCAATTGATGATATGACTAGAAGAGCCTTAGAAC TGGATAAGCATAATCCACATCTGGAGCTCACTCTTAGTGCTCGAAAGAAAATATCATCTGTATTTGAACATCTAAACCGAAAATGGGGCAATTCCAGTGT AGCATCTGGTGATCTTATGCTTTTCCCTTATACTGTTAACAGAGAGAACTTGTTGGGTTCTCAGAGATGGACTCAAGATACTACTGCCAGTGCAGCAGAT ATATATAATTCACTCGGTAACCCACCGGTATTTCGCTTAAGATATGGTTGGTTCTCTGATTCCGGATATCAATCCGTGCTGTTGCAAGCACCTTCAATAT CAAGATGCACACCATCTGGGAATGATATTGACACAAATAGCAATAAACAGAAGGAACATTCTACGTCTGCATCAACATGTTTTGGTTCTCAGAAACTTGT AGATGTCTCCCAGGATCAACCATCCTTGATGAATAAAACTTCTGATCCCAGTAGTATTTCGTCAAATCCTCTGCCAGCCTTATCATGTTTAAGAACGGCC ACAGATGATGGGACTAATATGAAGCCACTAGAAGATGGGCTTACCATTTGTATGCAAAATACGAAGGATGAGCTGAGACTGAGCAATGGTACTGCATTAT CTGCTGGAGAATGGGCCGATAGCCTCACCAACATCAGTGTTGGCGATCTACTTTCCGAAGTGACTCAAAATGATCAATGTCTTGAGCCGGTCCCCTTCAG CTGTGATTCATTCGATGCTGCTATTGCTGCCCATATATCAAAACATCAAAACAAGTTCGGATTTCCACCATTAGTGCAACCACAGACATCATCTATCTGG GATGCAGATGAAACATGTGATGCCTTCTCATTTCAAAAGAATCATATTTCTCATCAACAAGTGTCTAGGACATCCAATGTGACTTCATCAACAGCTGGGA AACAGGATTTTCCTAATTTGGGAGGGCAATTGGGTTACTATGCTGATGGAGATCCAATGGAGGAAGAAGCCATGGATAACCCCAGCAAAGATTTCAGTGG ACTTTCCGACGTCTATTGGCCCGACTCTCTTGGGGCATTAGATCTGGACATACCATCGTGTAAATACGACAGCGAGGAAATAGTACTAAATGATAGCCTT GGTGGGTTGAACCGTCTTATAGCCAGCAGTTTGGATGCGTTTCAAAACTGCTCCTTCTTAGGGCTGGAGAAGAAAGATTCAGCATCGACGGTGGAAGCTC GAGATAGTACCTCGTTTTCAGGCTTTAAAGTTGGCAGTGGGGTGTGA
AA sequence Show only first row Show all	>Lus10013816 pacid=23159424 polypeptide=Lus10013816 locus=Lus10013816.g ID=Lus10013816.BGIv1.0 annot-version=v1.0 MEPLVSLGSQALLHTETAVQDQSPCVLSSTPDHVEPQLPVKKKTRQWAAWTRQEEERFFTALRQFGKNFEKITNRVQSKNKDQVRHYYYRLVKRMNKYLG PALCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALENQLIKDRKKNERKRPLQGESASPIATSSVTKQNRASAQGAVMVKLVLIDGQ NIQKLGSSKGSLRRNASVGVMRNTNKGSPGLMKPPRQKRKQSAVTPAAYRKWEKAAIAGVSLVADAAEHLERTAIDKDVNADQAEGGLDPVDKELVPLPV SSHHQTGDSNVCSNMKLKLQFFPIDDMTRRALELDKHNPHLELTLSARKKISSVFEHLNRKWGNSSVASGDLMLFPYTVNRENLLGSQRWTQDTTASAAD IYNSLGNPPVFRLRYGWFSDSGYQSVLLQAPSISRCTPSGNDIDTNSNKQKEHSTSASTCFGSQKLVDVSQDQPSLMNKTSDPSSISSNPLPALSCLRTA TDDGTNMKPLEDGLTICMQNTKDELRLSNGTALSAGEWADSLTNISVGDLLSEVTQNDQCLEPVPFSCDSFDAAIAAHISKHQNKFGFPPLVQPQTSSIW DADETCDAFSFQKNHISHQQVSRTSNVTSSTAGKQDFPNLGGQLGYYADGDPMEEEAMDNPSKDFSGLSDVYWPDSLGALDLDIPSCKYDSEEIVLNDSL GGLNRLIASSLDAFQNCSFLGLEKKDSASTVEARDSTSFSGFKVGSGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	0	1
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	2.2	0.9255
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	4.9	0.9168
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	5.1	0.8804
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	8.4	0.8918
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	8.5	0.8861
					Lus10027950 [exp]	8.8	0.8664
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	10.1	0.9040
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	11.2	0.8892
AT4G26410			Uncharacterised conserved prot...		Lus10034621 [exp]	14.1	0.8113
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	16.6	0.8967

Compare expression of checked genes

Lus10013816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.