Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57620 216 / 4e-68 MYB ATMYB36 myb domain protein 36 (.1) AT3G49690 215 / 6e-68 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G65790 217 / 1e-67 MYB AtMYB68 myb domain protein 68 (.1) AT2G36890 213 / 6e-67 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G23000 207 / 2e-64 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT4G37780 204 / 1e-63 MYB ATMYB87 myb domain protein 87 (.1) AT5G56110 166 / 1e-48 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT4G09460 160 / 1e-47 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT3G61250 161 / 4e-47 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G15310 161 / 6e-47 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026543 [exp] 476 / 1e-169 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10023002 [exp] 262 / 2e-86 AT2G36890 236 / 4e-77 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10001394 [exp] 258 / 1e-84 AT5G57620 236 / 2e-76 myb domain protein 36 (.1) Lus10021428 [exp] 230 / 3e-73 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10016139 [exp] 229 / 4e-73 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10011606 [exp] 218 / 3e-68 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10007248 [exp] 218 / 5e-68 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 217 / 5e-68 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10039646 [exp] 217 / 8e-68 AT5G57620 244 / 6e-79 myb domain protein 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099200 [exp] 257 / 6e-84 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.006G123400 [exp] 249 / 6e-81 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 230 / 3e-73 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 228 / 2e-72 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.002G113700 [exp] 218 / 2e-68 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 216 / 1e-67 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G234200 [exp] 214 / 1e-67 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 216 / 2e-67 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.006G170800 [exp] 211 / 1e-65 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.018G058800 [exp] 205 / 1e-64 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013830 pacid=23159474 polypeptide=Lus10013830 locus=Lus10013830.g ID=Lus10013830.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCACCATGCTGTGACAAGGCCAATGTGAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCTAAGCTCAAGGACTACATCCACCAGAATGGCA CTGGTGGCAACTGGATTTCCCTCCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGATGGCTGAACTACTTGAGACCAAACATCAA ACATGGAGAATTCACTGATGATGAAGACAGAATCATTTGCACCCTTTTTGCTAACATTGGAAGCAGATGGTCAATAATAGCAGCTCAGTTGCCAGGCAGG ACTGATAATGATATAAAAAACTACTGGAACACCAAGCTCAAGAAGAAACTCATGGGTACTTTGCTCCCCACTAATTCTTCTTCCTCCTCCTACAGAAAAT TGCCCTTTCATCCTCACCATCTCGCGAACTATGCTTCGATCCTCCAATCTTCGCCACTTTCCAATTCAGTACTCACCTCCTCCAATTCATCACTCTCAGT TGACCACCCATCATCTAGTCATAGCACTAACCCTTTCAAATCAAACCACAACAATTACGGACTGATCAGGCCGATGATCGCGAATGATCAGTTAACCTGC AGCAACAATTCCTGCTCCTTCAACTCTGCTATGCAACAACATTACCAGGTGAAAGATAGAGTCTTTATGTTTGGAGGAGCCACTGAAGCAAGTTGCAGCT CATCAGATGGAAGTTCAAACAATGTTCTTCAGCATCAGGCTAATAAGGAGTTTGACTATGAGAATGAGCAGCAGCAGCAGCAGCATCAACAGTTGTTCAA GATGGGTGGTTATAGCCAGCAGGGGAGTGTGATTAGTAGTACTAATTTCACTGACTACATAAGTAGTACTGGTTTCTGTAATCAGATGACGATGAATAGT CCTAATAATTTGGAAGATTATGGTCTGGAGGAGATCAAGCAGCTTGTGAGCACTTGCAATAACAATAATAACTTGTTACTGTTTGATGACAACAGGAAAG AGGAGAGGGTTATGTTCTACTGA
AA sequence Show only first row Show all	>Lus10013830 pacid=23159474 polypeptide=Lus10013830 locus=Lus10013830.g ID=Lus10013830.BGIv1.0 annot-version=v1.0 MGRAPCCDKANVKKGPWSPEEDAKLKDYIHQNGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDDEDRIICTLFANIGSRWSIIAAQLPGR TDNDIKNYWNTKLKKKLMGTLLPTNSSSSSYRKLPFHPHHLANYASILQSSPLSNSVLTSSNSSLSVDHPSSSHSTNPFKSNHNNYGLIRPMIANDQLTC SNNSCSFNSAMQQHYQVKDRVFMFGGATEASCSSSDGSSNNVLQHQANKEFDYENEQQQQQHQQLFKMGGYSQQGSVISSTNFTDYISSTGFCNQMTMNS PNNLEDYGLEEIKQLVSTCNNNNNLLLFDDNRKEERVMFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	1.4	0.9686
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	1.7	0.9665
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	2.2	0.9623
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	2.4	0.9621
AT5G41810			unknown protein		Lus10001907 [exp]	2.8	0.9625
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	3.2	0.9669
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	4.1	0.9457
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	4.6	0.9562
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	5.2	0.9413
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	5.2	0.9523

Compare expression of checked genes

Lus10013830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.