Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42005 149 / 4e-44 Transmembrane amino acid transporter family protein (.1) AT4G38250 148 / 8e-44 Transmembrane amino acid transporter family protein (.1) AT5G65990 145 / 2e-42 Transmembrane amino acid transporter family protein (.1) AT3G11900 71 / 4e-15 ANT1 aromatic and neutral transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026549 [exp] 211 / 4e-68 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022995 [exp] 169 / 7e-52 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10001390 [exp] 168 / 2e-51 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10021089 [exp] 71 / 4e-15 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10017224 [exp] 71 / 6e-15 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102300 [exp] 155 / 1e-46 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 155 / 2e-46 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 150 / 2e-44 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 73 / 7e-16 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10013835 pacid=23159453 polypeptide=Lus10013835 locus=Lus10013835.g ID=Lus10013835.BGIv1.0 annot-version=v1.0 ATGGGAGTTGTGATGGTCGAAGATGTCTCGATTATATCACAAAACGACACCGTCCAAGAAGTCAAGGCATTCGGGAGTCTATTGGTATTCTTCTACGGAA TGGGAGTGGCCGTCTACGCATTCGAAGGAATCGGAATGGTCCTGCCTCTGGAATCGGAAGGCAAACACAAGGACAAATTCGAGAGGAATTTGGCCTTTGC GATGGGATTCATGTCGGCTATCTACGGAGCGTTTGGCGCGTTAGGTTACCTTGCGTTTGGTAGCGAGACTAAAGACACTATAACTGCGAATCTCGGAGTC AGGTCGGTTAGTACATTGGTGCATATCGGATTGTGTATAAACCTGTTCTTTACATTTCCGTTGATGATGAACCCGGTTTACGAGATCGTGGAGAGGCAGT TCTGA
AA sequence Show only first row Show all	>Lus10013835 pacid=23159453 polypeptide=Lus10013835 locus=Lus10013835.g ID=Lus10013835.BGIv1.0 annot-version=v1.0 MGVVMVEDVSIISQNDTVQEVKAFGSLLVFFYGMGVAVYAFEGIGMVLPLESEGKHKDKFERNLAFAMGFMSAIYGAFGALGYLAFGSETKDTITANLGV RSVSTLVHIGLCINLFFTFPLMMNPVYEIVERQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42005			Transmembrane amino acid trans...		Lus10013835 [exp]	0	1
					Lus10034388 [exp]	1.4	0.9408
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	2.0	0.9271
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	10.9	0.8280
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	14.3	0.8485
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10020687 [exp]	14.9	0.8951
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	17.3	0.8449
AT3G56290			unknown protein		Lus10029051 [exp]	20.9	0.8730
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10015483 [exp]	20.9	0.7665
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	28.3	0.8533
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10040034 [exp]	31.4	0.7018

Compare expression of checked genes

Lus10013835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.