Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18450 89 / 1e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 77 / 6e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 76 / 3e-16 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT1G04370 72 / 1e-15 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT5G43410 72 / 1e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17500 74 / 3e-15 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47230 74 / 3e-15 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G61600 73 / 3e-15 AP2_ERF ERF104 ethylene response factor 104 (.1) AT2G44840 73 / 3e-15 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT3G23240 72 / 3e-15 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005281 [exp] 263 / 2e-88 AT4G18450 118 / 1e-31 Integrase-type DNA-binding superfamily protein (.1) Lus10029334 [exp] 81 / 2e-18 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10042996 [exp] 80 / 2e-17 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 80 / 2e-17 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10027469 [exp] 79 / 2e-17 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10013959 [exp] 75 / 5e-17 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10025430 [exp] 76 / 7e-17 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10014655 [exp] 76 / 2e-16 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10003562 [exp] 76 / 3e-16 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061800 [exp] 132 / 5e-37 AT4G18450 134 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051800 [exp] 126 / 4e-35 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.011G061700 [exp] 84 / 1e-19 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 83 / 2e-19 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.005G223300 [exp] 81 / 6e-18 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 81 / 6e-18 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.003G150800 [exp] 81 / 1e-17 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 79 / 3e-17 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 80 / 4e-17 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G079600 [exp] 78 / 4e-17 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10013958 pacid=23170052 polypeptide=Lus10013958 locus=Lus10013958.g ID=Lus10013958.BGIv1.0 annot-version=v1.0 ATGCAGAACAACGTGCTAACTCTGGAGGACGTATGGGCTAGCTTCATCAATGGTAACCAATCACGAAACGATGAAGAACACGAAGATCTACCGTCGCCAA AAGTTCAAAACGGCGAGGGACAACAACCAATGCAGAGCATTTTGGAGAGGCTTCCGAGCTTGGGGAGATGGATATCAATGGGGGAAGAAGCATGGGATGA AATCCTTAAAGCGGACTTCCTCCGCCCTTCGATGGAAAGTACTGAATTGCCCTCGGTGAGCGATGTATTTAGCTCACATGAGTTTTGCGACGGTAGGGTT ACAGTGGAGAAAAATAAGGTTGTAAGGACGAAACACTATAGAGGGGTGAGGAGGAGGCCGTGGGGGAAGTATGCTGCGGAGATAAGGGACTCGACGAGGA ATAATGGAGCTAGGGTTTGGTTAGGGACGTTCGATACTGCGGAGGAAGCTGCATTGGCTTACGATAGGGCGGCATTGAGGATAAGAGGATTGAAGAAGGC GCATCTCAATTTCCCTTTCGAACCTGTCGCTAATAGTGGTTTTGGTGGAGGTGGAGATTTAGGAGGGAGGAAGAGGAAAAGGGGTTCGAGGAAATGTGAA GGACAAGACGGAAGAGTGACTGATAAGCAATCTATATTGAAGAGATGTAGGGGTGAAAATCGGGAGGGAAGATTGATCGGAGATGGTGTGTTCGAGTTAG AAGATTTAAAAGAATTAATGGGGAGTGATTTTTTAGATAGTTTTTTGAAGTCTTTGTCTCATTAA
AA sequence Show only first row Show all	>Lus10013958 pacid=23170052 polypeptide=Lus10013958 locus=Lus10013958.g ID=Lus10013958.BGIv1.0 annot-version=v1.0 MQNNVLTLEDVWASFINGNQSRNDEEHEDLPSPKVQNGEGQQPMQSILERLPSLGRWISMGEEAWDEILKADFLRPSMESTELPSVSDVFSSHEFCDGRV TVEKNKVVRTKHYRGVRRRPWGKYAAEIRDSTRNNGARVWLGTFDTAEEAALAYDRAALRIRGLKKAHLNFPFEPVANSGFGGGGDLGGRKRKRGSRKCE GQDGRVTDKQSILKRCRGENREGRLIGDGVFELEDLKELMGSDFLDSFLKSLSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10013958 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021387 [exp]	5.2	0.6565
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	11.1	0.6556
					Lus10003636 [exp]	24.5	0.6270
					Lus10005608 [exp]	26.4	0.6348
					Lus10000576 [exp]	34.1	0.6217
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	44.3	0.6325
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	55.7	0.5874
AT2G06090			Plant self-incompatibility pro...		Lus10029389 [exp]	56.1	0.5857
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10025149 [exp]	56.8	0.5857
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	67.2	0.5841

Compare expression of checked genes

Lus10013958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.