Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46110 620 / 0 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT5G54800 245 / 9e-78 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT1G61800 235 / 1e-73 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G17630 228 / 1e-70 Nucleotide/sugar transporter family protein (.1) AT3G01550 197 / 5e-59 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 195 / 5e-58 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT4G03950 132 / 1e-35 Nucleotide/sugar transporter family protein (.1) AT1G77610 85 / 5e-18 EamA-like transporter family protein (.1) AT1G21870 84 / 1e-17 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G12500 81 / 9e-17 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015399 [exp] 765 / 0 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10037085 [exp] 530 / 0 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10007653 [exp] 240 / 9e-76 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10018356 [exp] 240 / 1e-75 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10019209 [exp] 235 / 2e-73 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10004312 [exp] 234 / 2e-73 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10011155 [exp] 233 / 9e-73 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 232 / 2e-72 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10013083 [exp] 205 / 4e-62 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057800 [exp] 630 / 0 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 552 / 0 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 547 / 0 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.001G420200 [exp] 238 / 6e-75 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.013G071900 [exp] 239 / 1e-74 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G019900 [exp] 237 / 3e-74 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 236 / 6e-74 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.012G082100 [exp] 213 / 9e-65 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 211 / 2e-64 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 209 / 2e-63 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10013978 pacid=23170107 polypeptide=Lus10013978 locus=Lus10013978.g ID=Lus10013978.BGIv1.0 annot-version=v1.0 ATGGAGTCGCGAGTGCTCTCACGCGCATCCGCTTCATTGCCTCAGCTGCCGAAGCTCCCGCCGCGGCAGAGCGTTGGTTTCGCCTCCTCCGGTAGCTTCC TCTCCATGAAAAAACCGATCATCGGTGGCGAAGGCGGGAACCTCGTCTCCGGTAGGAATCTCCGTCCGATCCTCCTCCTCGAGGCGAAGCGCGAGAGCGC TGTGAAGCCTGTCCTAGCCGCCGCTTCATCTCCCGCCGATGGAAGCGATTCCGCCGGGGATGCTGCTCCGGTTGGGTTCTTCAACAAGTATCCGGCCCTC GTCACCGGATTCTTCTTCTTCATGTGGTATTTCCTGAACGTCATTTTCAACATCATGAACAAGAAGATCTACAATTACTTCCCTTATCCATACTTTGTAT CGGTTATTCATCTGGCTGTTGGAGTAGTGTACTGTCTGATCAGCTGGGCAGTGGGCCTTCCAAAGCGGGCTCCTATTGATGGAAATCTTCTGAAGCTACT GATTCCAGTAGCAGTTTGTCATGCTCTAGGACATGTTACCAGCAATGTCTCTTTTGCAGCTGTTGCTGTGTCCTTCACCCACACAATCAAAGCACTTGAG CCGTTCTTCAATGCTGCTGCTTCCCAGTTCATTCTAGGACAGTCAATCCCCATTTCACTGTGGCTGTCACTTGCTCCCGTTGTTCTTGGTGTTTCTGTGG CTTCCCTGACCGAACTGTCGTTCAACTGGCTGGGATTCATCAGTGCCATGATTTCTAACATCTCCTTCACCTACCGTAGCATCTATTCCAAGAAGGCTAT GACTGACATGGACAGCACCAATGTCTATGCATACATCTCAATCATTGCTCTCATTGTCTGCCTCCCACCAGCCATTTTCTTGGAAGGACCTAAGCTAATG CAACATGGCTTCAATGATGCAATCACCAAAGTTGGCATGACCAAGTTCGTCACTGACCTCTTCTGGGTTGGACTCTTCTATCACCTCTACAACCAGTTGG CCACCAACACTCTGGAGAGGGTTGCACCCCTGACCCATGCCGTTGGCAACGTGTTGAAACGTGTGTTCGTTATCGGATTCTCCATTGTCATCTTCGGCAA CAAGATTTCGACACAAACCGGTATTGGAACATGCGTTGCCATTGCTGGAGTGGCAATCTACTCGTACCTCAAGGCCAAGATCGAGGAAGAGAAACGGCAA AAGAAAGCCACCTGA
AA sequence Show only first row Show all	>Lus10013978 pacid=23170107 polypeptide=Lus10013978 locus=Lus10013978.g ID=Lus10013978.BGIv1.0 annot-version=v1.0 MESRVLSRASASLPQLPKLPPRQSVGFASSGSFLSMKKPIIGGEGGNLVSGRNLRPILLLEAKRESAVKPVLAAASSPADGSDSAGDAAPVGFFNKYPAL VTGFFFFMWYFLNVIFNIMNKKIYNYFPYPYFVSVIHLAVGVVYCLISWAVGLPKRAPIDGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALE PFFNAAASQFILGQSIPISLWLSLAPVVLGVSVASLTELSFNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCLPPAIFLEGPKLM QHGFNDAITKVGMTKFVTDLFWVGLFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCVAIAGVAIYSYLKAKIEEEKRQ KKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10013978 [exp]	0	1
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	1.0	0.9910
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	2.0	0.9260
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	4.0	0.9390
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	5.5	0.9377
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	7.7	0.9260
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	10.4	0.9257
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10002723 [exp]	11.3	0.8647
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	14.5	0.8809
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	14.7	0.8841
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	14.9	0.8887

Compare expression of checked genes

Lus10013978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.