Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02840 274 / 1e-89 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT3G09600 265 / 4e-86 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT1G01520 197 / 8e-60 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT5G52660 194 / 4e-58 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 186 / 1e-55 MYB Homeodomain-like superfamily protein (.1.2) AT5G17300 103 / 4e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 99 / 3e-23 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT3G10113 99 / 1e-22 MYB Homeodomain-like superfamily protein (.1) AT1G18330 99 / 1e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT2G46830 100 / 2e-22 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019902 [exp] 447 / 4e-156 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 206 / 2e-62 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 204 / 6e-62 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 193 / 5e-58 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 191 / 2e-56 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 170 / 5e-48 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10031322 [exp] 102 / 2e-23 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 101 / 4e-23 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10030184 [exp] 100 / 1e-22 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083900 [exp] 314 / 9e-105 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 312 / 7e-104 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 199 / 8e-60 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 195 / 3e-58 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 190 / 8e-57 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 183 / 6e-54 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 102 / 2e-23 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 102 / 4e-23 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.015G030400 [exp] 101 / 5e-23 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 101 / 1e-22 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014015 pacid=23156778 polypeptide=Lus10014015 locus=Lus10014015.g ID=Lus10014015.BGIv1.0 annot-version=v1.0 ATGCTTGGCGCCAACGCGCGGCTCCTCAACGCCACACAGCTTGCTCTGAATCTGGCCCAGTTTACACTACTCGCCAACTCTCCCGCGCCCCCACGCGCAC CATCTCTTCTCTATTCTGAATTCTTCTCGCTCCTCCCTCATTTTCATTTCCCCCTTCCCCTGCCTCTTCTTTTCCCTCCTGCGGCCATTCCTCGTTCCGA TTCATACAGTTCCAAAGTTGCTGAAGAAGAAACAGAGGTCAACGGTAAAATGAATTCCAACTCTACTTCCTCCCCATCGAATCCACCACCTCCGCCGCCT CCTGCCCCGCCTCCAACCACCACGTCATCATCCATGGAGACATCCACTCACACTTCTGACGCCTCCGGCAAGAAGGTCAGGAAGCCGTACACTATCACCA AGTCTCGCGAGAGCTGGACCGAGGAAGAGCACGATAAGTTCCTTGAAGCTCTTCAGCTGTTTGATCGTGACTGGAAGAAGATAGAAGACTTTGTTGGTTC GAAAACAGTAATCCAGATTAGGAGCCACGCACAGAAGTACTTCTTGAAAATTCAAAAGAACGGCACCGTTGCACATGTTCCTCCTCCTCGTCCCAAGCGG AAAGCGGCTCATCCTGCATTAACTACCATCATTCTTATACATGCTGTATGCCTTCATGTCACAGTTTTGATCCCATTTCCAATTCCTTACCCTTCATTAA TCAATACCCTTCCAACCGCGTACACCCAGTGGGCTGATGATCCTTCCATGCTAATAAACAACTCAACAAACTGTATCATGGCATCACCAGATGATTTTGC GAATTTTCATCTAGTTGGAGGCATGCCTGATATTGGATCAAAGGGGGTCGCAACATTTAATAACTTTAGTATTAGTGGCCTTGGAACCTCGAACAGACCC CTTCCAAGTTCTGATAAAGTAAAACAAGAGAAACAAGCTCCAGATGTTCATGGGATCCCAGATTTTGCAGAAGTGTATAGCTTCATTGGGAGTGTGTTTG ATCCAGACACCAAAGGCCATGCGAGGAAGCTCAAAGAAATGGATCCGATAAACTATGAAACGGTCATGTTGTTGATGAAGAATCTTACAATGAACTTGTC TAGTCCCAGATTTGAGCCAATTGTAAGTGTTCTTGCACCTAATTCTACGTATAAAAAGTTGACTTCAAGCCTTTATTTTCTCTTTGTACCAACACATTAT CAGTCATGGCTAGCAAATGCTTTCTACTTGGAAATAGAATCAGATCAGGACTCACCATGTTGTGTTCATGTAGACCAGATCTTTTTATCTTTTCTAAATT ACATTAGAAGTTCTCTTAGCCGTTCCCTATTAAATTGTGATCTCTTACCATAG
AA sequence Show only first row Show all	>Lus10014015 pacid=23156778 polypeptide=Lus10014015 locus=Lus10014015.g ID=Lus10014015.BGIv1.0 annot-version=v1.0 MLGANARLLNATQLALNLAQFTLLANSPAPPRAPSLLYSEFFSLLPHFHFPLPLPLLFPPAAIPRSDSYSSKVAEEETEVNGKMNSNSTSSPSNPPPPPP PAPPPTTTSSSMETSTHTSDASGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKIQKNGTVAHVPPPRPKR KAAHPALTTIILIHAVCLHVTVLIPFPIPYPSLINTLPTAYTQWADDPSMLINNSTNCIMASPDDFANFHLVGGMPDIGSKGVATFNNFSISGLGTSNRP LPSSDKVKQEKQAPDVHGIPDFAEVYSFIGSVFDPDTKGHARKLKEMDPINYETVMLLMKNLTMNLSSPRFEPIVSVLAPNSTYKKLTSSLYFLFVPTHY QSWLANAFYLEIESDQDSPCCVHVDQIFLSFLNYIRSSLSRSLLNCDLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10014015 [exp]	0	1
AT3G12320			unknown protein		Lus10008671 [exp]	1.4	0.9259
AT2G46735			unknown protein		Lus10030208 [exp]	2.0	0.9196
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	3.5	0.8811
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10042534 [exp]	5.7	0.8969
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	6.7	0.8547
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	10.6	0.8551
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10006189 [exp]	14.9	0.8653
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	15.0	0.8662
AT2G46790		TL1, APRR9	TOC1-LIKE PROTEIN 1, Arabidops...		Lus10015571 [exp]	16.3	0.8188
AT3G15760			unknown protein		Lus10005715 [exp]	16.3	0.8393

Compare expression of checked genes

Lus10014015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.