Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34410 113 / 4e-30 AP2_ERF RRTF1 (Redox Responsive Transcription Factor1 ), ERF109 redox responsive transcription factor 1 (.1) AT5G61890 87 / 1e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G43160 86 / 1e-20 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 87 / 2e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 86 / 3e-20 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G07310 86 / 7e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G50080 84 / 1e-19 AP2_ERF ERF110 ethylene response factor 110 (.1) AT2G47520 81 / 9e-19 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 82 / 1e-18 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT4G11140 82 / 3e-18 AP2_ERF CRF1 cytokinin response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022426 [exp] 84 / 1e-18 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10003601 [exp] 82 / 2e-18 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10033664 [exp] 81 / 2e-18 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10037448 [exp] 84 / 3e-18 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10008214 [exp] 82 / 4e-18 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 81 / 1e-17 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10005805 [exp] 81 / 2e-17 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 81 / 2e-17 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10013186 [exp] 81 / 2e-17 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101900 [exp] 143 / 9e-42 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.004G141200 [exp] 134 / 3e-38 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1) Potri.007G043400 [exp] 91 / 5e-22 AT1G28370 91 / 4e-23 ERF domain protein 11 (.1) Potri.001G067600 [exp] 86 / 3e-20 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 86 / 4e-20 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.005G195000 [exp] 87 / 1e-19 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.012G108500 [exp] 84 / 2e-19 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.001G163700 [exp] 86 / 4e-19 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.014G126100 [exp] 83 / 2e-18 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 82 / 2e-18 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10014054 pacid=23156806 polypeptide=Lus10014054 locus=Lus10014054.g ID=Lus10014054.BGIv1.0 annot-version=v1.0 ATGCAGAACAGCAATTCTCCCAATCTCCGATCGACGACGAGTCACACCCACTTCGATTCGCCGTCGATGTCTTCTTCTCGTCTCTCACAGCAGGAGGAGC TCGACATCATGGTGTCTGCACTCCGACACGTAGTCTCCGGCACCACCACAACAACCGCAGTCTCTCCCAATACGACACCGTTTCACTTTCATATTCCTCA GCCTGCGATTCTGGACACGTGTACTGTGTGCGGGAACCAGGGGTGTTTGGGGTGCGACATTTTCCCGCCCAATCAAGAGGATCAAAATTCGAACAAGAAG AACAACACCAAGTCCAAATCCACGACGACGGCGGTGAGGAAGAGAGGAAAGAAGAACTACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCGTCGG AGATTCGAGATCCACGCCGGGCGACCAGAGTTTGGCTAGGAACTTTCGAGACGGCTGAGGAGGCGGCAAGGGCTTACGATAAGGCGGCGATCGAGTTCCG AGGGCCGAGAGCCAAGCTCAATTTCCCTTTCCCTGATCATTCTCAGCTCCAGCAGTCGGGATCGGAGAAGAAGGAGAAAATTCAGGAGGAACAGCGGAAT GGAAAAACTGGGGGGAGCAGTGAATTGGGGGATCAGGAGGATTTTCAAGAGTGGATGATGATGCTGATGGACTTCTCCGGCGGTGACTCGTCGGATTCTG CTGGTACGACGGGAACCGTTTGTACTTCCTCCGGGAATTTGTGCTTCTAG
AA sequence Show only first row Show all	>Lus10014054 pacid=23156806 polypeptide=Lus10014054 locus=Lus10014054.g ID=Lus10014054.BGIv1.0 annot-version=v1.0 MQNSNSPNLRSTTSHTHFDSPSMSSSRLSQQEELDIMVSALRHVVSGTTTTTAVSPNTTPFHFHIPQPAILDTCTVCGNQGCLGCDIFPPNQEDQNSNKK NNTKSKSTTTAVRKRGKKNYRGVRQRPWGKWASEIRDPRRATRVWLGTFETAEEAARAYDKAAIEFRGPRAKLNFPFPDHSQLQQSGSEKKEKIQEEQRN GKTGGSSELGDQEDFQEWMMMLMDFSGGDSSDSAGTTGTVCTSSGNLCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	0	1
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	1.7	0.9502
					Lus10001533 [exp]	2.0	0.9624
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	2.0	0.9477
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	2.8	0.9565
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	3.2	0.9447
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	3.5	0.9300
					Lus10022773 [exp]	4.2	0.9378
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	4.9	0.9432
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	5.7	0.9214
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	5.7	0.9406

Compare expression of checked genes

Lus10014054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.