Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 196 / 6e-62 MYB ATMYB73 myb domain protein 73 (.1) AT3G50060 192 / 1e-60 MYB ATMYB77 myb domain protein 77 (.1) AT2G23290 191 / 5e-60 MYB ATMYB70 myb domain protein 70 (.1) AT5G67300 187 / 1e-58 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G55730 163 / 4e-48 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 161 / 1e-47 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 147 / 2e-42 MYB ATMYB25 myb domain protein 25 (.1) AT3G09370 131 / 2e-35 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT1G69560 126 / 1e-34 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 125 / 1e-34 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010238 [exp] 203 / 1e-64 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 202 / 2e-64 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10030336 [exp] 187 / 9e-58 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10040940 [exp] 181 / 3e-57 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10010260 [exp] 182 / 3e-56 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10007503 [exp] 179 / 4e-56 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10028979 [exp] 179 / 5e-56 AT4G37260 181 / 1e-55 myb domain protein 73 (.1) Lus10032764 [exp] 175 / 3e-54 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10021762 [exp] 174 / 6e-54 AT2G23290 179 / 8e-55 myb domain protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096000 [exp] 214 / 1e-69 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.002G122600 [exp] 215 / 3e-69 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.001G300200 [exp] 211 / 7e-69 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.014G022500 [exp] 202 / 2e-64 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.007G048900 [exp] 199 / 1e-62 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 196 / 2e-61 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G128900 [exp] 182 / 2e-57 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.014G035100 [exp] 176 / 4e-55 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.008G070900 [exp] 170 / 2e-52 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.010G195000 [exp] 168 / 5e-50 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014103 pacid=23156757 polypeptide=Lus10014103 locus=Lus10014103.g ID=Lus10014103.BGIv1.0 annot-version=v1.0 ATGGATCAAGATTCAGCCGTAGATCGGGTCAAAGGACCATGGAGCCACGACGAAGACGAGTTACTCCAGAGGCTGGTTCAGCGGCACGGCGCAAGGAACT GGTCTCTAATAGCAAGGTCGGTTCCTGGGAGATCTGGAAAATCCTGCCGGCTCCGGTGGTGCAACCAGCTATCGCCGGAGGTTGAGCACCGGCCGTTCAC TCCCGAGGAGGATGAGATCATAACGAAAGCGCATTCGAAGTACGGGAACAAGTGGGCCACGATCGCGCGCCTCCTGAACGGGAGGACGGATAACTCGGTG AAGAATCACTGGAACTCGACGCTGAAGAGGAAGCACGTAGTCGCTTTCAGCGACGACGAGCGGGAACGACAGCCGGAGAAGAAGCAGGCGAGGACGGTTT CATTTTCCCCTGAAAGTCCGTCGCAGTCCGGATCTGATGTGAGCGACGGTGTTGATGTCCAGACAGGGAATGTAACGGATGATGTATCGACAGAGCTGAC GCTATCTCTACCGGGGAAGAGATCTGCGGATCTGTTGACGGCGGAGGGGAAGAAATCGGCGCTGGAAACGGCGCCGTTTGGGAGTGGTATGCTGGCGGTT TTGCAGGAAATGATAAGGAAAGAAGTGGAGAGTTACATGGAAGGGAAAGAAGGAGAGGAGATTAGGAATGCCGTGATTGAGCGATTTCGAATCGGCAACC TGATTTAA
AA sequence Show only first row Show all	>Lus10014103 pacid=23156757 polypeptide=Lus10014103 locus=Lus10014103.g ID=Lus10014103.BGIv1.0 annot-version=v1.0 MDQDSAVDRVKGPWSHDEDELLQRLVQRHGARNWSLIARSVPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDEIITKAHSKYGNKWATIARLLNGRTDNSV KNHWNSTLKRKHVVAFSDDERERQPEKKQARTVSFSPESPSQSGSDVSDGVDVQTGNVTDDVSTELTLSLPGKRSADLLTAEGKKSALETAPFGSGMLAV LQEMIRKEVESYMEGKEGEEIRNAVIERFRIGNLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10014103 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	2.0	0.7777
AT3G57790			Pectin lyase-like superfamily ...		Lus10042350 [exp]	28.6	0.7302
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	32.6	0.7033
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	52.0	0.6902
AT4G14180		ATPRD1	putative recombination initiat...		Lus10022584 [exp]	53.7	0.6965
AT3G19990			unknown protein		Lus10017359 [exp]	58.1	0.7250
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	70.0	0.6848
AT3G42150			unknown protein		Lus10017643 [exp]	83.4	0.6829
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	83.7	0.6943
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	164.2	0.6752

Compare expression of checked genes

Lus10014103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.