Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16720 249 / 4e-77 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G38620 249 / 1e-76 MYB AtMYB4 myb domain protein 4 (.1) AT4G09460 242 / 9e-75 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 233 / 4e-71 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 229 / 3e-70 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G34990 230 / 9e-70 MYB ATMYB32 myb domain protein 32 (.1) AT5G16770 201 / 3e-58 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 197 / 6e-57 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 198 / 7e-57 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 194 / 4e-56 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016948 [exp] 241 / 1e-73 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10000411 [exp] 241 / 1e-73 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10001548 [exp] 240 / 2e-73 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10009448 [exp] 239 / 7e-73 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10028435 [exp] 228 / 2e-69 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 227 / 2e-69 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10033473 [exp] 221 / 5e-67 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10018418 [exp] 199 / 2e-57 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 194 / 8e-56 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174400 [exp] 256 / 2e-79 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 255 / 4e-79 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.T011400 [exp] 245 / 1e-74 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 245 / 1e-74 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 243 / 4e-74 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.019G081500 [exp] 242 / 5e-74 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.013G109300 [exp] 241 / 1e-73 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.005G112000 [exp] 239 / 1e-73 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.010G114000 [exp] 219 / 4e-66 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 209 / 2e-62 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014129 pacid=23156855 polypeptide=Lus10014129 locus=Lus10014129.g ID=Lus10014129.BGIv1.0 annot-version=v1.0 ATGGGGAGATCGCCGTGCTGCGAGAAAGCACACACCAACAAGGGCGCCTGGACCAAGGAAGAAGACGACAGACTCGTCTCCTACATTAAATCCCACGGCG AAGGCTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAACG CGGCAACTTCTCCGACGACGAGGACGAGCTCATTATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCGTTGATAGCAGGGAGATTACCTGGGAGAACG GATAACGAAATAAAGAACTATTGGAACACTCATATTCGCCGTAAACTTCTCAATCGAGGAATAGATCCGGCTCCTCCCCGTCCGCTTTCGGATTCCTCTG CCGCCGCCGCTGCCGGAAGCTGCGGCGGATCCCCTACTGCCTGCGCAACACCTGCCGCTTCCTCTGCCACAATTTCTTTCACGGTGAGGGATCAGGAAGA CAGTAAAAGCAGTGTCAGGCGAAATACGACGGCGATGACGGGAACCGCGACGTCGTCGACGGCGGCGGGGGAGAGGGAAAAGGAGGACCTCAAGTGTCCG GACCTGAACTTGGAGCTGAGAATCAGCCCGCCGTACCAAGACCATTTCTCCGGAGGGAGGAGGGAGGGGGCAGACGGNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCCACCCCCATTTATACATACATTTTATTCTCAAA TAAAACGAAATCTAACACAAATTTACTTACGAAACTTCCCCTCGCTTCCCATTTTACCCTTTTTCCAAATGTGGAACAAACCAAGGAAGCCAAAATGTAG TTAA
AA sequence Show only first row Show all	>Lus10014129 pacid=23156855 polypeptide=Lus10014129 locus=Lus10014129.g ID=Lus10014129.BGIv1.0 annot-version=v1.0 MGRSPCCEKAHTNKGAWTKEEDDRLVSYIKSHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSDDEDELIIKLHSLLGNKWSLIAGRLPGRT DNEIKNYWNTHIRRKLLNRGIDPAPPRPLSDSSAAAAAGSCGGSPTACATPAASSATISFTVRDQEDSKSSVRRNTTAMTGTATSSTAAGEREKEDLKCP DLNLELRISPPYQDHFSGGRREGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXHPPPFIHTFYSQIKRNLTQIYLRNFPSLPILPFFQMWNKPRKPKCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	0	1
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	1.7	0.9090
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	2.4	0.8625
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	3.2	0.8428
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	5.1	0.8898
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	5.3	0.8529
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10025339 [exp]	5.8	0.7979
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	5.9	0.8317
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023450 [exp]	10.8	0.7522
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	18.0	0.8222
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10025815 [exp]	20.9	0.8017

Compare expression of checked genes

Lus10014129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.