Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 423 / 2e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 427 / 3e-127 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 424 / 3e-127 transmembrane receptors;ATP binding (.1.2) AT5G17680 397 / 4e-118 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 384 / 1e-112 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 335 / 1e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 335 / 5e-96 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 331 / 4e-95 TAO1 target of AVRB operation1 (.1) AT5G11250 321 / 9e-92 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41750 317 / 4e-91 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001366 [exp] 1121 / 0 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 1108 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 1093 / 0 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042165 [exp] 981 / 0 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 965 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 961 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 956 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10037406 [exp] 934 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 910 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 478 / 6e-151 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 474 / 5e-150 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 476 / 1e-148 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 475 / 5e-148 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 468 / 4e-147 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 469 / 8e-146 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 468 / 3e-145 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 467 / 1e-144 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 464 / 1e-144 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 466 / 3e-144 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10014207 pacid=23152852 polypeptide=Lus10014207 locus=Lus10014207.g ID=Lus10014207.BGIv1.0 annot-version=v1.0 ATGGAGATCTTGTTAGCATGGTGGTCTTCCTGTTTGGTGATATTCGTCCCCTTGATTATATTCTTCTTCTCCAACTTCCGGAGAAGGAGGAACACTCCTT CACAGACGCAGCTCATCGTCGATTCCCCTTCTTCTCCCTCCGATTCGTCTTCGCAGCAGCCTCTCCCTAGCGGAGAGTACGAAGTTTTCCTGAGCTTCCG AGGTCCGGACACTCGCAACAACATAGCCGATTTCCTCTACACCTACCTCCACCGATCAAGAATCCGAACTTTCAGAGACGAGGAAGAGCTCCGCAAGGGA GAGGAGATTGCTCCTGGCCTAATCCAGGCCATTCACCAGTCCAAGATCTATATCCCGATTTTCTCCAGAACGTACGCTTCTAGCAAGTGGTGCCTGAAGG AGCTAGCTCAAATGGTGGATTGCCGGAACCAAGACCGTGGCCATGTCTTCTTCCCTATCTTCTACCTTGTTGATCCCAGGGACGTGAGGCATCAGACCGG GTCTTACCAGGAAGCGTTTCGGCTTCATGAGATGAAGCACGACAGGAAAACTGTGCAAGAGTGGAGAGATGCTCTCAAAGTGGTTGGAGAGATGAAAGGA TGGCACATCAGTGACTCCAATTGGCAAGGAAGTATAGTAGACCAGGTTTTCGAAAAGGTGTTATCACTTTTGAACAAGAATTATACATTGGTGACGGATG AGTTAGTTGGGATTGTTCACCATGTGGAGAAGGTTGTGAAATTACTTGCCGAAGAAGACTCGGATGCTGTGAAAGTTGTAGGGATTCATGGCATGGGTGG CATTGGCAAGACCACTATCGCCACTGCTGTTTACAACGAGATGAGTACACACTTCGGACGTTGTAGCTTTCTCGAAGATGTACGAGAAACATTGCAACAG CACGAGGGTGTTGTCGCTTTACAGAACAAGCTGATCTCCAGCATTACAAGAGCGAACTCTTCGGTTACTAATGCTAGCGAAGGGGTCCGGGTGATAAAAG ACAGAATTTCACGGCACAAAGTTCTCATCGTTCTCGACGACGTGGATGAGAAGTTCGAATCTGAAAAGATCTTGGGACGATACGAGAACTTCTCTGCGGG CAGTAGGTTTATCATTACAACTAGGAATAAGAAACTGCTGACTTCGATTCAAGGGTGCGAATTGTATGAACCTGAAGAAATGAGTGCTAGACATTCCCTT CAACTGTTTAGCAAGCATGCTTTCAGAATGGATCGTCCCCCAAAAAATTATGAAAGCTTATCTAGACAAATCGTTTTAGTTGCTGCAGGACTTCCTTTGA CTCTTAAAGTTGTAGGTTCCCTTCTGTTTGGTGAAGATAAGTCGATCTGGGAAGACACGTTTATGCAGTTACAAGAAATCCCTCCCACGGAGGTCGTAGG AAGGCTTAAACTAAGTTACAATGCTTTGACATACCAGGAGCAAAGGATCTTTCTTGATATTGCTTGCTTCTTCATTGGAGAGAACAGAGAAATGGCTTCT TATATGTGGAAGGATTGCAAGTTTTATCCAGTCAGTGGGATCAATGTCCTCATCCTTAGGTCCTTGATCAAAATCGGACCAAAGAATGAGTTCAAGATGC ATGATCAGCTGAGAGACCTTGGTCGGGTGATTGTTCGTGAGGAGAATTTCGAGAATCCATGGAAGCGAAGTCGAGTATGGTCTCACGACGATGCTTTGGA CATATTAGAACGCAAGAAGGGAACAGACAGTGTTGAAGCCCTGAGATTAGCGAAAGGTAACAGCATATATCAGCTCACAAACGAACAGTTTGAGAAATTG CCAGAGTTAAGATATCTTGATATCAATGGGGTAACTATTACTGGGGATTTTCATGCTCTCCTTTCAAATTTAAGGTGGCTTCGATTATCCCCACTAAAAG GAGGACGTTCACCTATAGCAAACTTCCCCCCAATGAAACTGGTGATTCTTGACCTGTCCGGGAGCTATATACCAGATTCTTGGGGAGGATGGACCAATAT AAAGATGGCACAGAATCTGAAAGTTCTGAATCTCTACACCTGTGGTGGTCTGACCAAAGTTCCAGACCTATCCGAGTACAAGAATCTGGAGCAGTTAAAT CTGGAAAAATGCAGAGGGATTGTTGATCAGGACTTGGATATTGGCACCCTCAAGAATCTAAAAGTGGTTAAGCTTGGGTTCACTCGTATAACGAGGCTAA TTGGGAACATCGGAATGCTTCCAAACCTGGAAGAGATAGACGCATGGGGTTGCAGAAACTTGAAAGAAGTAGCTCCTGATATAGGGGAATCAACGTCTCT TAAAATATTGAGACTCTGTTCCGAAGTGAAACTAAATCTGCCTGAGCTTCCCTTAAGTTTGAAGGAGCTCAGCCTCTCGTCTCAAATTCCTAATCTTTCC AGCTTGAAGGAATTAGTGGAGCTACGGTTTGACAATTGTGAGGAAGGGTTTGAAATTGCAGGAGATTACGTTATGTTGAGTTTGTCCAAGTTGAAGTCCC TGGAACTGTACCGTACTAACATCACAGTTAGTCAGACAACTCCAGGTGCCGTTCTTCCATCTTCTCTAAACAAGCTCGTCCTCGACGGTTGCCCGTTACT GGAGAGATTGCCGGATATGGAGAATCTGGTGAGTCTGAAGGAGCTGAAGCTGAATGGATGTCCCCAAATTAAAGAGATTCAAGGCCTTGGAAAGCTGAAA TCATTGACAAGTCTAACGATTGACGACGGTCAAAGTTTAGATAACTTGGATGGCCTTGGGAATCTAGTCTCTTTGACAGACTTGGTCCTGTTACGCTGTC CGGTAATTGAGAATCTACCAACCTTAGCCCATTTGGTGAACATGAAATCTATATCCTTCTGGAGATGTGACCGTCTCACTGGAATCCAAGGCCTTAACGG TGGAATATCCAAGTCGTTAAGGGAGCTTGATGTAGGTGTATGCCCAGCATTACAAGAATTGGAAGGCCTTGACTCTCTAGAAGCACTGGAGCACCTACGG TTGAGGGGATTCGACTTGTTAGAAACGCTACCGTCTGTATCAAAGATGACCAAGCTTAAAGAGTTACTCGTAAGGGATCACCCACGCTTACGCTCGATCG AAGGTGTTGAGTGCTTGAAATCGTTGCGAACATTGTCGTTGGAAGGGTGCGGTTCGCTCGAAAGATTCCCGGATTTGTCTAGCTTAAAGAGTCTTACTGT GTTGTACTTTGATGGGTGTGTGAATTTGACAGAGGTGGTGGGACTTGCAGAGGTGGAAACCTTACGAACCCTGTCACTGAAGGGCTGTGTGAAGCTGACT CAGGTTCTGGGGATCGAAAAGCTGAAGTCTTTGGCCGAGTTGAATCTGCCTGGATGCACATTGCTAGAGGAGTTGCCGGATTTGAGTGGTTTGAAGAAGA GCTTGAGGATGGTGAACTTGAGTGGGTGCACCAAATTGAAAGAAGTGGTTGGAGTTGAGAAACTCACGTCCTTAACAGTTTTGAACTTTTCAGGATGTGC ATCACTGGAGAGATTGCCAGATGTGTCTGGTCTCAAGGGTTTGAAAGTAATGAACACCACTGGATGCACAAAGCTGGCTGGGTAA
AA sequence Show only first row Show all	>Lus10014207 pacid=23152852 polypeptide=Lus10014207 locus=Lus10014207.g ID=Lus10014207.BGIv1.0 annot-version=v1.0 MEILLAWWSSCLVIFVPLIIFFFSNFRRRRNTPSQTQLIVDSPSSPSDSSSQQPLPSGEYEVFLSFRGPDTRNNIADFLYTYLHRSRIRTFRDEEELRKG EEIAPGLIQAIHQSKIYIPIFSRTYASSKWCLKELAQMVDCRNQDRGHVFFPIFYLVDPRDVRHQTGSYQEAFRLHEMKHDRKTVQEWRDALKVVGEMKG WHISDSNWQGSIVDQVFEKVLSLLNKNYTLVTDELVGIVHHVEKVVKLLAEEDSDAVKVVGIHGMGGIGKTTIATAVYNEMSTHFGRCSFLEDVRETLQQ HEGVVALQNKLISSITRANSSVTNASEGVRVIKDRISRHKVLIVLDDVDEKFESEKILGRYENFSAGSRFIITTRNKKLLTSIQGCELYEPEEMSARHSL QLFSKHAFRMDRPPKNYESLSRQIVLVAAGLPLTLKVVGSLLFGEDKSIWEDTFMQLQEIPPTEVVGRLKLSYNALTYQEQRIFLDIACFFIGENREMAS YMWKDCKFYPVSGINVLILRSLIKIGPKNEFKMHDQLRDLGRVIVREENFENPWKRSRVWSHDDALDILERKKGTDSVEALRLAKGNSIYQLTNEQFEKL PELRYLDINGVTITGDFHALLSNLRWLRLSPLKGGRSPIANFPPMKLVILDLSGSYIPDSWGGWTNIKMAQNLKVLNLYTCGGLTKVPDLSEYKNLEQLN LEKCRGIVDQDLDIGTLKNLKVVKLGFTRITRLIGNIGMLPNLEEIDAWGCRNLKEVAPDIGESTSLKILRLCSEVKLNLPELPLSLKELSLSSQIPNLS SLKELVELRFDNCEEGFEIAGDYVMLSLSKLKSLELYRTNITVSQTTPGAVLPSSLNKLVLDGCPLLERLPDMENLVSLKELKLNGCPQIKEIQGLGKLK SLTSLTIDDGQSLDNLDGLGNLVSLTDLVLLRCPVIENLPTLAHLVNMKSISFWRCDRLTGIQGLNGGISKSLRELDVGVCPALQELEGLDSLEALEHLR LRGFDLLETLPSVSKMTKLKELLVRDHPRLRSIEGVECLKSLRTLSLEGCGSLERFPDLSSLKSLTVLYFDGCVNLTEVVGLAEVETLRTLSLKGCVKLT QVLGIEKLKSLAELNLPGCTLLEELPDLSGLKKSLRMVNLSGCTKLKEVVGVEKLTSLTVLNFSGCASLERLPDVSGLKGLKVMNTTGCTKLAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10014207 [exp]	0	1
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	15.4	0.8663
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	16.3	0.8546
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	18.8	0.8596
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	28.7	0.8529
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	29.9	0.8540
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	31.3	0.8522
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	33.8	0.8459
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	36.0	0.8439
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	39.5	0.8402
					Lus10034709 [exp]	47.5	0.8117

Compare expression of checked genes

Lus10014207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.