Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 192 / 1e-59 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 190 / 3e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 184 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 182 / 1e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 182 / 1e-56 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 184 / 2e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 182 / 3e-56 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 173 / 6e-53 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 172 / 6e-53 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 167 / 7e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014227 [exp] 404 / 1e-143 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 378 / 3e-133 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 295 / 2e-100 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 294 / 3e-100 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 294 / 6e-100 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 293 / 1e-99 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 290 / 8e-99 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 290 / 2e-98 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 285 / 1e-96 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 271 / 3e-91 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 267 / 1e-89 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 259 / 1e-86 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 258 / 5e-86 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 253 / 4e-84 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 252 / 1e-83 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 251 / 4e-83 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 250 / 4e-83 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 248 / 2e-82 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 246 / 1e-81 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014226 pacid=23152882 polypeptide=Lus10014226 locus=Lus10014226.g ID=Lus10014226.BGIv1.0 annot-version=v1.0 ATGAGCGCTACCAACGTCGTTAGTACCGTCCTTAAAAGGCTGGAAGGCAAAGTAGCGCTGATCACCGGCGGAGCCAGCGGGATCGGGGAAAGCACGGCCA AGCTGTTCGTCCAACACGGTGCCAAGGTCGTCATCGCCGACGTCCAAGACCAACTCGGCCGGTCACTCGCCGGCAAGTTGGGGGGGCCACAGGCGGCCCC CTCCGTCCACTGCGACGTCACCAACCCTGCCCACGTCAGCGATGCGGTTGACGAGGCAGTGTCCACGTATGGCCAACTGGACATCATGCACAACAACGCC GGCATCGCCGGCGCCCCGAATGCTAGCATCCTCAACTCCGACGTGGATAACTTTAAACGTGTCCTCGACGTCAACCTCGTTGGTCCCTTCCTAGGTGCCA AGCACGCTGCCAGGGTGATGGTCCCGGCGGGGAGAGGCGGTTGCATCCTGTTCACGGCCAGCACAGCTGCATTGCTGAGTGGCGGAAACATGCCGCACGC ATACAAGGTGTCGAAGAACGGGGTGGTGGCGTTAGCGAACAATCTTTGCGCCGAGCTTGGACAACACAGGATTCGAGTCAACGTGATATCACCTTACGGA GTGGCGACACCACTGGTGAGGAAGACACTGGGGGGGTTGAAAGAGGAGGAAGTGGAAGCGATCTTTGCGAAGATAGGTAACTTGAAAGGGGCGATTCTGA AAGCAGAGGACATTGCAGCAGCGGCGTTATACCTGGCTAGTGACGATGCTAAGTACGTGAGCGGACTGAATTTGGTCGTCGACGGAGGTCACAATCATAA CCATCCCTTCGACATTTAG
AA sequence Show only first row Show all	>Lus10014226 pacid=23152882 polypeptide=Lus10014226 locus=Lus10014226.g ID=Lus10014226.BGIv1.0 annot-version=v1.0 MSATNVVSTVLKRLEGKVALITGGASGIGESTAKLFVQHGAKVVIADVQDQLGRSLAGKLGGPQAAPSVHCDVTNPAHVSDAVDEAVSTYGQLDIMHNNA GIAGAPNASILNSDVDNFKRVLDVNLVGPFLGAKHAARVMVPAGRGGCILFTASTAALLSGGNMPHAYKVSKNGVVALANNLCAELGQHRIRVNVISPYG VATPLVRKTLGGLKEEEVEAIFAKIGNLKGAILKAEDIAAAALYLASDDAKYVSGLNLVVDGGHNHNHPFDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014226 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003231 [exp]	1.0	0.9658
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	7.5	0.9588
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006552 [exp]	12.7	0.9604
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	15.7	0.9630
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	24.4	0.9577
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030805 [exp]	25.5	0.9541
					Lus10002336 [exp]	27.1	0.9576
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	27.7	0.9588
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	28.4	0.9573
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	29.7	0.9511

Compare expression of checked genes

Lus10014226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.