Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26770 191 / 2e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 189 / 2e-58 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 176 / 4e-54 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 173 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 169 / 1e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 166 / 3e-50 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 166 / 3e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 163 / 8e-49 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 159 / 2e-47 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 154 / 2e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014228 [exp] 418 / 6e-149 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 392 / 1e-138 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 313 / 1e-107 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 312 / 3e-107 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 309 / 3e-106 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 309 / 4e-106 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 309 / 6e-106 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 307 / 3e-105 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 300 / 2e-102 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 271 / 6e-91 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 269 / 2e-90 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 268 / 8e-90 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 256 / 4e-85 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 253 / 4e-84 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 249 / 2e-82 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 248 / 3e-82 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 238 / 4e-78 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 236 / 3e-77 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 230 / 5e-75 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014227 pacid=23152876 polypeptide=Lus10014227 locus=Lus10014227.g ID=Lus10014227.BGIv1.0 annot-version=v1.0 ATGAGCGCCACTAACGCCGTTAGTTCCGTCATTAAAAGGTTGGAAGGTAAAGTTGCGCTGATCACCGGGGGAGCCAGCGGCATAGGCGAAAGCACGGCCA AGCTGTTCGTCCGACACGGCGCTAAGGTCGTCATTGCCGACGTCCAAGACCAACTCGGCCAGTCACTCGCCGGGAAGCTGGGTGGCCCACACGCCGCCAC ATACGTCCACTGTGACGTCACCAATCCTGCCCACGTCAGCCATGCGGTTGATGCGGCAGTGTCCACGTATGGCCAGCTGGACATCATGCACAACAACGCC GGCATCTCCGGCGACCTGAATACTAGCATCCTCAACTCCGACGACGATAATTTCAAACGAGTCCTCGACGTCAACCTCTTTGCGACCTTCTTAGGTGCCA AACACGCTGCCAGGGTGATGGTCCCGGCAGGGAGAGGCGGATGCATTCTGTTCACGGCCAGTTCGGTTGTACTGACGAGCGGAAACATGCCGTACGCATA TAAGGTGTCGAAGACTGGGGTGGTGGGGCTGGCCAACAATCTGTGCGCCGAGCTAGGACAACACGGGATCCGAGTCAACGTGATATCGCCTTTCGGGGTG GCGACGCCCTTGCTGAGGTCGGTATTGGGTGGGTTGGGTAAAGAGGATGCGGAAGCGTTCATTGAGAAAATAGGGAACTTGAGAGGTACAGTTTTGAGAG CGGAGGACATTGCGGCAGCAGCGTTGTACCTGGCTAGCGATGATGCTAAGTATGTGAGCGGGCTGAATTTGGTCGTGGATGGAGGTCACAATCATAACCA TCCTGTCTTTCCTGCTTCGACATTAACTAACTAG
AA sequence Show only first row Show all	>Lus10014227 pacid=23152876 polypeptide=Lus10014227 locus=Lus10014227.g ID=Lus10014227.BGIv1.0 annot-version=v1.0 MSATNAVSSVIKRLEGKVALITGGASGIGESTAKLFVRHGAKVVIADVQDQLGQSLAGKLGGPHAATYVHCDVTNPAHVSHAVDAAVSTYGQLDIMHNNA GISGDLNTSILNSDDDNFKRVLDVNLFATFLGAKHAARVMVPAGRGGCILFTASSVVLTSGNMPYAYKVSKTGVVGLANNLCAELGQHGIRVNVISPFGV ATPLLRSVLGGLGKEDAEAFIEKIGNLRGTVLRAEDIAAAALYLASDDAKYVSGLNLVVDGGHNHNHPVFPASTLTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	0	1
					Lus10010270 [exp]	1.0	0.9806
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	1.4	0.9797
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	4.6	0.9677
AT2G33420			Protein of unknown function (D...		Lus10011785 [exp]	6.0	0.9433
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	7.1	0.9287
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	7.7	0.9416
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	9.8	0.9236
					Lus10039824 [exp]	10.6	0.8978
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	11.3	0.9118
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	12.7	0.9402

Compare expression of checked genes

Lus10014227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.