Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26770 196 / 3e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 190 / 4e-59 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 181 / 5e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 174 / 5e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 174 / 6e-53 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 169 / 2e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 169 / 2e-51 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 163 / 4e-49 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 161 / 3e-48 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 150 / 5e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014227 [exp] 432 / 9e-155 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 374 / 6e-132 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 308 / 2e-105 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 305 / 2e-104 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 303 / 1e-103 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 303 / 1e-103 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 297 / 2e-101 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 297 / 4e-101 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 293 / 9e-100 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 286 / 4e-97 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 282 / 2e-95 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 276 / 6e-93 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 269 / 2e-90 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 262 / 9e-88 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 262 / 1e-87 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 257 / 1e-85 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 253 / 4e-84 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 251 / 2e-83 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 241 / 2e-79 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014228 pacid=23152870 polypeptide=Lus10014228 locus=Lus10014228.g ID=Lus10014228.BGIv1.0 annot-version=v1.0 ATGAGTGCCACTAACGCCGCTAGTTCCGTCATTAGAAGGCTGGAAGGCAAAGTGGCGCTGATCACCGGCGGAGCTAGCGGGATAGGAGAAGCCACGGCCA AGCTGTTCGTCCAACACGGCGCCAAGGTCGTCATCGCCGATGTCAAAGACCAACTCGGCGGGTCACTCACTGAGAAGCTGGGGGGCCCACACGCGGCCAC CTACGTCCACTGCGACGTCACAAATCCTGCCCACGTCAGCGATGCGGTTGACGCGGCAGTGTCCACGTATGGCCAGCTGGACATCATGCACAACAATGCC GGCATCGCCGGCAACTTTGATCCTCGCATCCTCAACTCCGACGACGATAATTTTAAGCGAGTCATCGACATTAACCTCTTCGGCGCCTTCCTAGGTGCCA AGCATGCCGCCAGGGTGATGGTACCGGCGGGGAGAGGCGGCTGCATCCTGTTCACAGCCAGTGCAGTCTCGGTGACGAGCGGCAACATTTCGTACGCATA CAAGGTGTCGAAGAACGGGGTGGTGGCGCTGGCCAACAATCTGTGCGCGGAGCTGGGACAGCACGGGATTCGAGTCAACGCGATATCGCCTTTCGCGCTG GCGACGCCGTTACTAAGGGCGGCGCTGGGCGGGATGGGAAAGGAGGAGGGTGACGCGTTCGTCGAGAAGATAGGGAACTTGAAAGGGACTGTTCTGAGAG AGGGTGATATTGCGGCGGCGGCATTGTACCTGGCTAGCGACGATGCTAAGTACGTGAGCGGGATGAATTTGGTCGTGGATGGAGGTCACAGGCAGAACAA CCCCATATTTCCTGCTTCGACGTTCACTAAGTAG
AA sequence Show only first row Show all	>Lus10014228 pacid=23152870 polypeptide=Lus10014228 locus=Lus10014228.g ID=Lus10014228.BGIv1.0 annot-version=v1.0 MSATNAASSVIRRLEGKVALITGGASGIGEATAKLFVQHGAKVVIADVKDQLGGSLTEKLGGPHAATYVHCDVTNPAHVSDAVDAAVSTYGQLDIMHNNA GIAGNFDPRILNSDDDNFKRVIDINLFGAFLGAKHAARVMVPAGRGGCILFTASAVSVTSGNISYAYKVSKNGVVALANNLCAELGQHGIRVNAISPFAL ATPLLRAALGGMGKEEGDAFVEKIGNLKGTVLREGDIAAAALYLASDDAKYVSGMNLVVDGGHRQNNPIFPASTFTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	0	1
					Lus10013260 [exp]	2.8	0.9969
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	3.2	0.9794
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	3.6	0.9271
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	4.0	0.9969
					Lus10005297 [exp]	4.9	0.9969
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	5.7	0.9969
					Lus10006529 [exp]	6.3	0.9969
					Lus10035557 [exp]	6.9	0.9969
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	7.2	0.8474
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	7.5	0.9969

Compare expression of checked genes

Lus10014228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.