Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50930 525 / 0 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 491 / 2e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 414 / 6e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 398 / 2e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 395 / 8e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 394 / 8e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 390 / 7e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 351 / 1e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 338 / 1e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 342 / 2e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025989 [exp] 726 / 0 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 426 / 1e-145 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 424 / 6e-145 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 414 / 1e-140 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 405 / 9e-137 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 391 / 1e-131 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 363 / 7e-120 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10015354 [exp] 348 / 8e-115 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 341 / 6e-112 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020900 [exp] 589 / 0 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 474 / 7e-164 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.007G020800 [exp] 465 / 1e-160 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G119066 [exp] 466 / 2e-160 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.007G020600 [exp] 464 / 2e-160 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 450 / 2e-155 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119900 [exp] 448 / 4e-154 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G177200 [exp] 427 / 5e-146 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 422 / 1e-144 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 386 / 1e-130 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10014284 pacid=23164699 polypeptide=Lus10014284 locus=Lus10014284.g ID=Lus10014284.BGIv1.0 annot-version=v1.0 ATGGCTTCATCAACATCGGCTGAAACCAATCTGGCCACCGCCAAGACCATACTCTCCACCGCGGCCTCGGTAGCAGCCACCGTCATGCTCGCTCGAACGG TAGCTCAGGATTTCATCCCCGACGAAATCCACGACTACTTCTTCTCCAGCATCCGTAAAATCCTGACCCGATTCTCTTCGCAACTGACCATGGTCGTCGA AGAATACAACGGGATCGAATCCAACCAAATCTACGACTCCGCCGAGATATACCTCGCCAGCAAGGTCAACTCGTCAACTCTCCAGCGGCTCAACGTCAGC AAAGTCGACAAGGAAAACCAGATCCAAGTCAGGATGGAAGCCCAGGAAGAGGTAACGGACGTTTTTCACGGCGTCAAATTCAAATGGGTTTTGGTGTCTC GACAAACGGAGTCTTCCTCATCAGGTTATAGCCGGCGCCGGTACGACCACCCCCAAATGTTCTTATCCAAGGAGCGGTCGTTCGAGGTCAGTTTCCCCAA ACAGCACAAATCAATGGCTCTCGAATCGTACTTCCCGCACATCGTCAGAGAAGCGAAATCGATGAATCAAGAGAACAAGACCCTCAAGCTTTCGACGGTC CATCCTGAAAATCTGTACGGAGACATGTCCGAAGTGTGGAGCGGAATTAATTTGGACCATCCCGCAACGTTCGACACTCTGGCTATGGATACAGAGGTGA AGAACATGGTTCTGAACGATCTGGACAGGTTTCTGAAAAGAAAGGACTATTACAGGAAAGTTGGGAAAGCGTGGAAAAGAGGGTATTTACTATATGGCCC TCCTGGAACGGGGAAATCCAGCTTGATTGCTGCAATGGCGAACTATCTGCATTTCGACATCTACGACCTGGAGTTGACTCAGCTAAGTCGAGACTCCGAG CTGAGGAGGTTGCTCATTGCAACCCCGAACCGGTCCATATTGGTCGTCGAGGATATAGATTGTACGATCGATTTGAAAGATCGATCAGGTGGTGATAATG CATCATCGACTCCTCTTGATCAAAACTCGTACAATAACGGGGAGCAAAACCAGGAGAGAGTGAGTCTGTCAGGATTGCTGAATTTTATCGACGGGTTGTG GTCAAGTTGTGGGGACCAGAGAATTATAGTGTTCACTACGAACCATAAGGAGAAGCTGGACCCGGCTTTGCTAAGGCCCGGGAGGATGGATGTGCATATA AACCTGTCCTACTGTACTCCTTGCGGGTTCAGGATTCTGGCCTCGAATTACCTTGGCCTTAAGGAGCACGAATTGTTTCCTGAGATTGAGGAGCTGATCT CGGGGTCGAAAGTGAGTCCCGCTGAAGTTGCGGAGCAGCTGATGAGGTATGATGAATCTGATCATGAGTATGTGCTTACTATGCTCATCGAGTTTCTGAA GCTGAAGCAGAGCGAGGATGCAACAAATGGAAGTGTGGATTCAGGAGAAGATCAAAGGAAGATTGTGGAAGAGATTAACTTGTGA
AA sequence Show only first row Show all	>Lus10014284 pacid=23164699 polypeptide=Lus10014284 locus=Lus10014284.g ID=Lus10014284.BGIv1.0 annot-version=v1.0 MASSTSAETNLATAKTILSTAASVAATVMLARTVAQDFIPDEIHDYFFSSIRKILTRFSSQLTMVVEEYNGIESNQIYDSAEIYLASKVNSSTLQRLNVS KVDKENQIQVRMEAQEEVTDVFHGVKFKWVLVSRQTESSSSGYSRRRYDHPQMFLSKERSFEVSFPKQHKSMALESYFPHIVREAKSMNQENKTLKLSTV HPENLYGDMSEVWSGINLDHPATFDTLAMDTEVKNMVLNDLDRFLKRKDYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTQLSRDSE LRRLLIATPNRSILVVEDIDCTIDLKDRSGGDNASSTPLDQNSYNNGEQNQERVSLSGLLNFIDGLWSSCGDQRIIVFTTNHKEKLDPALLRPGRMDVHI NLSYCTPCGFRILASNYLGLKEHELFPEIEELISGSKVSPAEVAEQLMRYDESDHEYVLTMLIEFLKLKQSEDATNGSVDSGEDQRKIVEEINL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10014284 [exp]	0	1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	3.0	0.9794
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	10.9	0.9754
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	11.2	0.9718
					Lus10015339 [exp]	12.6	0.9727
AT1G11340			S-locus lectin protein kinase ...		Lus10030767 [exp]	14.1	0.9584
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	15.9	0.9740
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	18.4	0.9635
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	20.7	0.9700
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	23.5	0.9702
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	24.4	0.9698

Compare expression of checked genes

Lus10014284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.