Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 165 / 2e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 147 / 1e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 146 / 2e-36 transmembrane receptors;ATP binding (.1.2) AT1G27180 125 / 1e-29 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G08450 114 / 6e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16920 114 / 8e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 110 / 8e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 110 / 9e-25 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16950 108 / 3e-24 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G45050 107 / 6e-24 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026011 [exp] 623 / 0 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10029628 [exp] 347 / 2e-104 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042165 [exp] 317 / 7e-95 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026961 [exp] 311 / 4e-93 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020524 [exp] 308 / 3e-92 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020536 [exp] 308 / 4e-92 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 308 / 1e-91 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 310 / 2e-91 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 305 / 7e-91 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 191 / 5e-51 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 188 / 4e-50 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.007G142600 [exp] 182 / 2e-48 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 182 / 4e-48 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 182 / 6e-48 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 179 / 3e-47 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 179 / 5e-47 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002066 [exp] 178 / 1e-46 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 177 / 2e-46 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 176 / 3e-46 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10014303 pacid=23164676 polypeptide=Lus10014303 locus=Lus10014303.g ID=Lus10014303.BGIv1.0 annot-version=v1.0 ATGGATTCTCCTCCAAAAGATTATGAAACTCTGTCTCACAAATTTGTGGAAGCTGCAGCAGGCCTGCCTTTGGCTCTTAAGGTTATAGGGTCACTTTTGT TTCGCAAAGATCAGACTGTTTGGGAAGAGAAGTTGATGCAATTGAAAGATGTTCCTCCTACTGATGTCCAAAGGAGGCTAAAGATAAGCTACGATTCATT GACGTACGAGCAACGCCAAATCTTTCTCGATATTGCATGTTTCTTTATTGGAGAGAACAAAAGGTTACCGGTTTATATGTGGAGTGATTGTAAATTTTAT CCCGAAGATGGTATTACCACTCTTATTCTCAGATCTTTGATAAAAGTTGATGAGAATGATCAGTTTTGGATGCATAATCTTATTAGAGACCTTGGAAGAG CAATTCTTCGTGATGAAAATGTTGAAGACCCAGGTCAGCGCAGCAGAATATGGTTAGCTGGTGATGCTTTGGAGATGTTGAAGAGTAAACAGGGGACTGT GAAAGTTAGAGCTCTTAGTGTTCATCTAGACCGTGAGCTGACAGAAAAGGAATTTAAGAACTTGACAAAGTTGAGATACCTTGAAGTAAAAGGTGCAATA TTGACAGGAGACTTCACGGAGATTCTTCAAGATATACGTTGGCTTCGGCTGCCTTCCTGCACTTCAATCCCCACTTGTTTCCAGATGAACAAATTGGCAA CACTCGAACTAGAGAATGTTGGGTTGAAAATTTTGAAAATCGACCTAGCCCTCCATGACAGTCTGGTGGTGGAAGATGATTCCGGGAATGCAGTGGCGCC TCCTCTCCTCCCATCGTCGCTCGTTTGCCTTCGCGTTCATGGCGATGAACTGCTTCGGATCCTGCCCAGTCTTGCAAATTTGAATAACTTGACGGAATTA TCTCTGAGATGTATAGGGGTGCATGAAGTTCATGGTCTGGGAGCGTTGACATCGTTGAAAATTTTGGAAATAGACGATGCACCGAACCTCGACAATCTCG ATGGCCTTGAAAATCTGATGCTTCTGGCAGAATTGACAATCTTTGAGTGTCCAGAACTCCAAAGGTTGCCGAATTTGGCGACCCTTAGCATGCTATGCTG CCTGGTGATCAGTGGTTGTCATCGAATAGCACATTTTGATGGCCTTGGTTCTCTGGTGGGACTAGAAAGGTTGGAAGTGGTGGACTGTGATTCAGCAGAA AGGTTGCGTCCTTCTCTGTGGAAGTTGGCAAAAATAAAGACCTTACTTCTTAAGGGAAACCAGCGGTTCTGGGACACCCGCAGCATTTCGCACTTGAGCT CATTGTTGAATCTAGAGATTTCAGGATGCGACTCAGTGAAACAATTGTTGAATCTTTCTCGCCTCAAGAATCTGAAGCGCTTGCTTGTTCACAGTTGCAA AAATTTGAGAGAGCTTACAGGACTCGAGGGAATGGAATCAGTAGAGGTGCTGGAAGCAGACTCGTGCGAGTCGCTGACCGAGTTGTCCAATCTGTCGACC CTGAAGAAGCTGAAGCAACTAAGGATTGAATTTTGCAGGGAGGTGAGGGAGGTTACAGGGTTTGAAGGGTTGGAGTCGTTAGAAGAGCTAGAGTTGACCA ACTTGACGATGGTGAGTAAGTTACGAGGCCTGTATGGTCTTAAGAATTTGAAGAGTTTCTTGATTCATGGATTAACAATGCTGAGTGAGGTTCGGGGACT GGGGAGATTGGAGTCATTGGAGGAGGTAAAAATATCTAACTGCATATCATTGAAGAGGCTGAAGAAACTGGATATATCAAGAAACCAATTGAGGGAAGTT ACAGGGGTGGAGGGATTGAAGTCGCTGGAGCAGTTCCTCTTGGTAGATTGCAGGTCAATTAAGAAGTCGCCTGATCTGAGTAATCTCAAGAATCTCAGGC TGGTCAATGTTCCAGGATCATACGTTAATTTAATGAATTGA
AA sequence Show only first row Show all	>Lus10014303 pacid=23164676 polypeptide=Lus10014303 locus=Lus10014303.g ID=Lus10014303.BGIv1.0 annot-version=v1.0 MDSPPKDYETLSHKFVEAAAGLPLALKVIGSLLFRKDQTVWEEKLMQLKDVPPTDVQRRLKISYDSLTYEQRQIFLDIACFFIGENKRLPVYMWSDCKFY PEDGITTLILRSLIKVDENDQFWMHNLIRDLGRAILRDENVEDPGQRSRIWLAGDALEMLKSKQGTVKVRALSVHLDRELTEKEFKNLTKLRYLEVKGAI LTGDFTEILQDIRWLRLPSCTSIPTCFQMNKLATLELENVGLKILKIDLALHDSLVVEDDSGNAVAPPLLPSSLVCLRVHGDELLRILPSLANLNNLTEL SLRCIGVHEVHGLGALTSLKILEIDDAPNLDNLDGLENLMLLAELTIFECPELQRLPNLATLSMLCCLVISGCHRIAHFDGLGSLVGLERLEVVDCDSAE RLRPSLWKLAKIKTLLLKGNQRFWDTRSISHLSSLLNLEISGCDSVKQLLNLSRLKNLKRLLVHSCKNLRELTGLEGMESVEVLEADSCESLTELSNLST LKKLKQLRIEFCREVREVTGFEGLESLEELELTNLTMVSKLRGLYGLKNLKSFLIHGLTMLSEVRGLGRLESLEEVKISNCISLKRLKKLDISRNQLREV TGVEGLKSLEQFLLVDCRSIKKSPDLSNLKNLRLVNVPGSYVNLMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10014303 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10012081 [exp]	1.0	0.9278
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	5.8	0.8733
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	7.3	0.8286
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	8.5	0.8286
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10009330 [exp]	9.5	0.7338
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	9.5	0.8286
					Lus10033096 [exp]	10.4	0.8286
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	11.2	0.8227
AT5G51490			Plant invertase/pectin methyle...		Lus10031141 [exp]	11.4	0.6277
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	11.4	0.8125

Compare expression of checked genes

Lus10014303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.