Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80580 81 / 5e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G28370 66 / 2e-13 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G53170 66 / 4e-13 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT3G20310 66 / 5e-13 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT3G15210 66 / 6e-13 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G12980 66 / 1e-12 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G28360 62 / 6e-12 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G24590 64 / 7e-12 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT5G44210 62 / 7e-12 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G50640 62 / 2e-11 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026053 [exp] 173 / 6e-54 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10033664 [exp] 64 / 2e-12 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10017907 [exp] 64 / 4e-12 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10039857 [exp] 63 / 5e-12 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035076 [exp] 64 / 6e-12 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10015415 [exp] 64 / 7e-12 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10031526 [exp] 62 / 2e-11 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10035129 [exp] 61 / 6e-11 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10035329 [exp] 61 / 7e-11 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053700 [exp] 101 / 1e-25 AT1G80580 93 / 6e-22 Integrase-type DNA-binding superfamily protein (.1) Potri.001G313500 [exp] 101 / 1e-25 AT1G80580 90 / 5e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.017G013700 [exp] 66 / 5e-13 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 66 / 7e-13 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047500 [exp] 65 / 8e-13 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.002G043300 [exp] 65 / 8e-13 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 64 / 9e-13 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.005G219600 [exp] 64 / 1e-12 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.004G047600 [exp] 64 / 2e-12 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G356100 [exp] 63 / 4e-12 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10014345 pacid=23164680 polypeptide=Lus10014345 locus=Lus10014345.g ID=Lus10014345.BGIv1.0 annot-version=v1.0 ATGTCGACGTCTTTCTTCCCGCAACCCCAAGGAACTGATCATTTGTTTCAAGAAGCAGTCGAAACGGTGCCGGTTCTGGAGGGGATAGCTGCCGTTGTTG GGGAGGAGATCCTGTACGGTACCACCACCATCCGACGAGCGACGAGCTGTACACGTGTCAACGAGCAACAACAAGGTGGGGGGGACCACCACCACCAGGC GACGACAGGCGGAGCGAGAAACTACAGAGGGGTGAGGAAGCGGCCGTGGGGGAGGTTTTCGGCGGAGATAAGGGACAGGGTGGGGAGGTGCCGTCACTGG CTGGGCACGTTTGACACTGCGGAGGAGGCGGCGCTTGCTTACGACTCCGCCGCTTTGAGGCTCAGAGGCGCCAAGGCCAAGACCAACTTCCTCGTCGTCC CTTCTACTTCCCTACTTCCCTCGCCTACCTCCCTACGCCCCCACCAAAAAAACACAACCCGCAGCCACCGTAAAAAAAGAAGAGAAACGACGGCGATTGT GGTGGTGGTGATAGTCATGAATGGGCGGTGGAGACTAGTTCGGCGGCTCGTCTTTTCAGCGGTGGTGGTGATGGTGGTTATGGACTCGGCGGTGTTAGTA ATAACTACACTAGTAGTCGTGGTAGTACTAGTGGTGGTGCGGTGGGGCTGGAGCTGGAGTTGGGGTTTGGTGTAG
AA sequence Show only first row Show all	>Lus10014345 pacid=23164680 polypeptide=Lus10014345 locus=Lus10014345.g ID=Lus10014345.BGIv1.0 annot-version=v1.0 MSTSFFPQPQGTDHLFQEAVETVPVLEGIAAVVGEEILYGTTTIRRATSCTRVNEQQQGGGDHHHQATTGGARNYRGVRKRPWGRFSAEIRDRVGRCRHW LGTFDTAEEAALAYDSAALRLRGAKAKTNFLVVPSTSLLPSPTSLRPHQKNTTRSHRKKRRETTAIVVVVIVMNGRWRLVRRLVFSAVVVMVVMDSAVLV ITTLVVVVVLVVVRWGWSWSWGLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	0	1
AT1G54215			proline-rich family protein (....		Lus10037669 [exp]	1.0	0.9967
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	2.0	0.9957
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	8.4	0.9923
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	11.1	0.9963
AT1G73620			Pathogenesis-related thaumatin...		Lus10031346 [exp]	11.5	0.9942
					Lus10009719 [exp]	14.0	0.9960
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	15.3	0.9873
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10020801 [exp]	15.6	0.9531
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	16.5	0.9936
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	18.3	0.9956

Compare expression of checked genes

Lus10014345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.