Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15350 96 / 2e-25 AtENODL17 early nodulin-like protein 17 (.1) AT4G12880 92 / 6e-24 AtENODL19 early nodulin-like protein 19 (.1.2) AT3G01070 90 / 5e-23 AtENODL16 early nodulin-like protein 16 (.1) AT2G27035 81 / 1e-19 AtENODL20 early nodulin-like protein 20 (.1) AT3G17675 79 / 3e-19 Cupredoxin superfamily protein (.1) AT3G27200 71 / 1e-15 Cupredoxin superfamily protein (.1) AT1G17800 70 / 1e-15 AtENODL22 early nodulin-like protein 22 (.1) AT5G26330 70 / 4e-15 Cupredoxin superfamily protein (.1) AT2G32300 71 / 6e-15 UCC1 uclacyanin 1 (.1) AT2G31050 69 / 1e-14 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026064 [exp] 312 / 2e-110 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10005229 [exp] 84 / 2e-20 AT2G27035 124 / 7e-37 early nodulin-like protein 20 (.1) Lus10005231 [exp] 81 / 5e-19 AT5G15350 192 / 8e-63 early nodulin-like protein 17 (.1) Lus10030690 [exp] 80 / 6e-19 AT5G15350 190 / 4e-62 early nodulin-like protein 17 (.1) Lus10002618 [exp] 75 / 1e-17 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10012165 [exp] 76 / 3e-17 AT5G07475 89 / 1e-22 Cupredoxin superfamily protein (.1) Lus10026749 [exp] 73 / 2e-16 AT2G27035 135 / 7e-41 early nodulin-like protein 20 (.1) Lus10007026 [exp] 72 / 4e-16 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10025536 [exp] 72 / 5e-16 AT2G27035 148 / 5e-46 early nodulin-like protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043600 [exp] 200 / 2e-66 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.003G183300 [exp] 200 / 8e-66 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.017G088600 [exp] 96 / 4e-25 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.003G117900 [exp] 86 / 3e-21 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.017G088500 [exp] 84 / 1e-20 AT2G27035 122 / 7e-36 early nodulin-like protein 20 (.1) Potri.003G047300 [exp] 81 / 4e-19 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.001G219800 [exp] 80 / 8e-19 AT2G27035 130 / 1e-38 early nodulin-like protein 20 (.1) Potri.004G121100 [exp] 77 / 5e-18 AT5G15350 149 / 4e-46 early nodulin-like protein 17 (.1) Potri.013G030000 [exp] 77 / 5e-18 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.009G136200 [exp] 75 / 3e-17 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10014356 pacid=23164704 polypeptide=Lus10014356 locus=Lus10014356.g ID=Lus10014356.BGIv1.0 annot-version=v1.0 ATGTCCACCAGCTCAACTAATTCAGCAGCTTATCCAATCTCGTTGGTGCTTTTTTGCATCCTCATCTCCTCAACCGCCGTCAACGGCACCGACCACATCG TCGGAGTCAACAAGGGTTGGAATCCAGGCATCAACTACACTCTCTGGGCGAACAACCAAACCTTCTATGTTGGCGATTTCATCTCATTTAGGTACCAGAA GACACAGTACAACGTTTTCAGAGTGAACGAGACTGGGTACGACAACTGTACGACGGAAGGAGCAACGGGGAACTGGAGCAGCGGGAAAGATTTCATTCTT CTTGATATGGCTAAAAGATACTACTTTATTTGTGGGAATGGCCAGTGCTTTAACGGGATGAAGGTCTCTGTTGTTGTGCATCCTCTGCCGTCGCCGTCGG GGGCTCCCGGCATGAATAGCACACATTCTGCTGCTGCTGCTCCGGTGGCTGCGGGGTTGGTTGGTTTCGGTTTGAGACAGGCCTTGGTTTTGGGGTTGGG TTGTATCTGGTTTGGATTTAGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10014356 pacid=23164704 polypeptide=Lus10014356 locus=Lus10014356.g ID=Lus10014356.BGIv1.0 annot-version=v1.0 MSTSSTNSAAYPISLVLFCILISSTAVNGTDHIVGVNKGWNPGINYTLWANNQTFYVGDFISFRYQKTQYNVFRVNETGYDNCTTEGATGNWSSGKDFIL LDMAKRYYFICGNGQCFNGMKVSVVVHPLPSPSGAPGMNSTHSAAAAPVAAGLVGFGLRQALVLGLGCIWFGFSWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	0	1
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	3.5	0.9462
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	4.9	0.9474
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	5.5	0.9465
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	6.5	0.9002
AT1G23965			unknown protein		Lus10030844 [exp]	8.4	0.9180
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	8.8	0.9329
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	9.1	0.9012
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	9.5	0.9149
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	9.8	0.9207
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	10.7	0.9393

Compare expression of checked genes

Lus10014356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.