Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36450 125 / 7e-36 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT4G25490 102 / 7e-27 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 102 / 1e-26 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT5G51990 100 / 5e-26 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT1G12630 99 / 8e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G25470 96 / 2e-24 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G25810 91 / 3e-22 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G52020 89 / 2e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 89 / 2e-21 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT1G77200 88 / 4e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023873 [exp] 124 / 4e-36 AT2G36450 121 / 3e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 110 / 7e-30 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 107 / 1e-28 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 104 / 8e-28 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10031655 [exp] 100 / 1e-26 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 100 / 9e-26 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031652 [exp] 94 / 4e-24 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10031654 [exp] 94 / 9e-24 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027414 [exp] 93 / 2e-23 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021000 [exp] 156 / 8e-48 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 154 / 4e-47 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 116 / 1e-32 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 113 / 2e-30 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110500 [exp] 105 / 2e-28 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136400 [exp] 104 / 3e-27 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 102 / 2e-26 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 100 / 8e-26 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136300 [exp] 96 / 3e-24 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 92 / 7e-23 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10014376 pacid=23143726 polypeptide=Lus10014376 locus=Lus10014376.g ID=Lus10014376.BGIv1.0 annot-version=v1.0 ATGCAGCCAAGTCAGCAGCAGCAGTACCCTTCCTACCGTGGGGTGCGCCGCCGGAGCAGCGGCAAGTGGGTGTCCGAAATCCGAGAGCCCAAGAAGCCCA ACAGAATCTGGCTAGGCACATTCCCCACCCCTGAAATGGCGGCTGTCGCCTATGACGTGGCGGCGCTCGCCCTCAAAGGCCGTGACGCCAAGGTCAACTT CCCGAATTCCTCGGCCTCGCTCCCTGTCCCTGCATCCACTTCCCCTAGGGACATCCAGGCGGCCGCCGCCTCTGCCGCCGCCGCAATCGGCGCCGCCAGG GACGCCCTCGGGATTAATGTTATGACTAATGGGAACTTCGGCGGCGGCGCGGGAGGGAATCAAACAGTGCTGACGTTGCAAGCCAATAATGATTATTTTT CGTCGTCGTCGTTTGTGGATGAGGATTTGATATTTGATATGCCGAATATTCTGATGAATATGGCGGAAGGTATGATGCTTAGTCCTCCTCGATTTGGAGG CGGCGCCGGCGCCCATGATGGTTACGGTTACGGTTATGGTTACGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTGA
AA sequence Show only first row Show all	>Lus10014376 pacid=23143726 polypeptide=Lus10014376 locus=Lus10014376.g ID=Lus10014376.BGIv1.0 annot-version=v1.0 MQPSQQQQYPSYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGRDAKVNFPNSSASLPVPASTSPRDIQAAAASAAAAIGAAR DALGINVMTNGNFGGGAGGNQTVLTLQANNDYFSSSSFVDEDLIFDMPNILMNMAEGMMLSPPRFGGGAGAHDGYGYGYGYGGGGXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10014376 [exp]	0	1
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	3.9	0.9353
AT3G50230			Leucine-rich repeat protein ki...		Lus10030067 [exp]	5.1	0.8614
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	7.9	0.9197
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	16.8	0.8772
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	18.2	0.8969
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10029081 [exp]	19.3	0.8057
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10040916 [exp]	25.1	0.8493
AT5G59350			unknown protein		Lus10016568 [exp]	27.9	0.8925
AT1G05060			unknown protein		Lus10035303 [exp]	29.5	0.8798
					Lus10041251 [exp]	31.7	0.8680

Compare expression of checked genes

Lus10014376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.