Plant FIBer expression Database

Lus10014397 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03555 658 / 0 permease, cytosine/purines, uracil, thiamine, allantoin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023889
[exp]
211 / 9e-67 AT5G03555 119 / 1e-32 permease, cytosine/purines, uracil, thiamine, allantoin family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G119500
[exp]
664 / 0 AT5G03555 659 / 0.0 permease, cytosine/purines, uracil, thiamine, allantoin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF02133 Transp_cyt_pur Permease for cytosine/purines, uracil, thiamine, allantoin
Representative CDS sequence
>Lus10014397 pacid=23143685 polypeptide=Lus10014397 locus=Lus10014397.g ID=Lus10014397.BGIv1.0 annot-version=v1.0
ATGGCAACACCCCAACCCGACCCATCCCTCACCAACGACGACCTCAACCCGACCGACCCATCCCAACGAACCTTCACCCGCTACGAAATGGCCAGCCTCT
GGATCGGCCTAGTCGTCGGCGTCCCTACCTACTACCTCGCCGGATCCTTAGTTGACTTAGGCATGTCCTGGTGGCAAGGAATCGCCACCGTCGTCGCCGC
CAACATAATCCTCCTTTTCCCACTCATCCTCACTGGCGACCCAGGAACCCGGTACGGCATCTCCTTCCCCGTCCTCGCCAGATCCGCATTCGGTATCCAC
GGGTCCCACATCCCGACTCTGCTCCGCGCACTAGTCGGATGCGGCTGGTACGGAATCGAAACCTGGATCGGCGGCCAAGCAATCTTCATCCTCCTCCCTA
ACGCAACCAAATCCGGTCCATGGTCGCACAACCTACAATGGTTGGGAACCTCGGGACTCGAATTCGCCTGCTTCATCATCTTCTGGGTAGCTCAGCTGGT
CATAGCCCTGCGCGGGATGGAAGGAATCCGGAAGCTGGAGAAGTACTCCGCTCCGATTCTGATAGCGCTGACTTTGGCGCTGTTGACTTGGGCTTACGTT
AACGCCGGCGGGTTGGGGCATATGCTGTCGATGAAATCTACACTGACGAGATCTCAATTTTGGGCGCTGTTTTTCCCGTCGTTAACGGCGAACGTTAGCT
TCTGGGCGACTCTGGCGCTCAACATTCCGGATTTTACCCGGTTCGCGAAAAGCCGGACCGATCAGGTTTTGGGTCAATTGGGTCTCCCGGTTTTTATGGG
CTTGTTTACCTTCGTTGGGCTGGCGGTTACTTCGTCGACCAAGGTGATATTCGGTCGGGTGATTTCGAATCCGATTGAGTTGCTCGAGCAGATCGGTGGG
GTTTGGACCATGATTTTGGCTATCGTTGGTATTAGCTTGGCTACCGTTACGACGAACATTGCTGCTAACGTCGTCGCTCCGGCTAATGCTCTGGTCAACC
TCAGCCCGTCAACGTTTACCTTCAGGAGAGGGGCGTTGTTGACGGCATTACTGGGGATCCTATTCCAGCCATGGCGGCTGCTGCAATCGAGTGAGAGCTT
CGTGTATACATGGCTCGTCGGGTACTCTGCTTTGATGGGTCCGATCGGAGGGATTCTGTTGGCGGATTATTACCTGATTCGCCGGACTAAATTGAACGTC
CCGGATCTGTACACGTCGAGTCCTGACGGGGAGTATTTCTACACCGGCGGGTACAATTTGGCGTCGATTGGGGCCTTGGTCGTCGGGATTTTACCGGTGG
TTCCTGGATTCTTGCAGAAAGTTGGGATTGTAAAGGAGACGAGTGGAATTTTGGTGGGGATTTACAACAATGCTTGGTTTTTCAGCTTTTTCCTAGCTGG
GTTTCTATACTGGATTGTTTCGAGTTTCATCGGAGCTCGTAGGAGATTCGGCGATGGCAGCGATCCTCTGCTGGCTGTAGAAAATGAAGTAAGATGA
AA sequence
>Lus10014397 pacid=23143685 polypeptide=Lus10014397 locus=Lus10014397.g ID=Lus10014397.BGIv1.0 annot-version=v1.0
MATPQPDPSLTNDDLNPTDPSQRTFTRYEMASLWIGLVVGVPTYYLAGSLVDLGMSWWQGIATVVAANIILLFPLILTGDPGTRYGISFPVLARSAFGIH
GSHIPTLLRALVGCGWYGIETWIGGQAIFILLPNATKSGPWSHNLQWLGTSGLEFACFIIFWVAQLVIALRGMEGIRKLEKYSAPILIALTLALLTWAYV
NAGGLGHMLSMKSTLTRSQFWALFFPSLTANVSFWATLALNIPDFTRFAKSRTDQVLGQLGLPVFMGLFTFVGLAVTSSTKVIFGRVISNPIELLEQIGG
VWTMILAIVGISLATVTTNIAANVVAPANALVNLSPSTFTFRRGALLTALLGILFQPWRLLQSSESFVYTWLVGYSALMGPIGGILLADYYLIRRTKLNV
PDLYTSSPDGEYFYTGGYNLASIGALVVGILPVVPGFLQKVGIVKETSGILVGIYNNAWFFSFFLAGFLYWIVSSFIGARRRFGDGSDPLLAVENEVR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03555 permease, cytosine/purines, ur... Lus10014397
[exp]
0 1
AT1G32900 GBSS1 granule bound starch synthase ... Lus10033245
[exp]
1.0 0.9354
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Lus10039301
[exp]
2.4 0.9274
AT1G06040 CO BBX24, STO SALT TOLERANCE, B-box domain p... Lus10025579
[exp]
3.7 0.9341
AT2G35490 Plastid-lipid associated prote... Lus10035384
[exp]
4.0 0.9259
AT4G32480 Protein of unknown function (D... Lus10006177
[exp]
5.5 0.9168
AT4G32480 Protein of unknown function (D... Lus10041046
[exp]
6.3 0.9141
AT3G58070 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, ... Lus10016238
[exp]
7.4 0.9172
AT3G60690 SAUR-like auxin-responsive pro... Lus10015879
[exp]
8.1 0.9069
AT4G00895 ATPase, F1 complex, OSCP/delta... Lus10012618
[exp]
10.2 0.9148
AT3G21750 UGT71B1 UDP-glucosyl transferase 71B1 ... Lus10026795
[exp]
12.6 0.9097

Lus10014397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.