Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24310 211 / 2e-67 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 204 / 8e-65 MYB ATMYB79 myb domain protein 79 (.1) AT3G30210 177 / 5e-54 MYB ATMYB121 myb domain protein 121 (.1) AT3G27810 164 / 1e-49 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 162 / 5e-49 MYB ATMYB24 myb domain protein 24 (.1) AT1G48000 162 / 1e-48 MYB ATMYB112 myb domain protein 112 (.1) AT3G46130 162 / 2e-48 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 160 / 9e-48 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT1G68320 161 / 1e-47 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT3G01530 157 / 6e-47 MYB ATMYB57 myb domain protein 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023711 [exp] 409 / 1e-144 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10034372 [exp] 182 / 1e-56 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10005079 [exp] 181 / 6e-56 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10022259 [exp] 164 / 2e-49 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10005886 [exp] 160 / 7e-48 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10038062 [exp] 161 / 1e-47 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10041435 [exp] 160 / 1e-46 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10032129 [exp] 156 / 2e-46 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 155 / 3e-46 AT5G40350 224 / 1e-74 myb domain protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173400 [exp] 240 / 1e-78 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.010G064000 [exp] 230 / 8e-75 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.004G118000 [exp] 186 / 2e-58 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.017G099500 [exp] 186 / 3e-58 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Potri.004G115600 [exp] 184 / 1e-57 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.010G149900 [exp] 166 / 5e-49 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.017G071500 [exp] 162 / 5e-49 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G122100 [exp] 164 / 1e-48 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.001G346600 [exp] 160 / 2e-48 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 163 / 5e-48 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014453 pacid=23176853 polypeptide=Lus10014453 locus=Lus10014453.g ID=Lus10014453.BGIv1.0 annot-version=v1.0 ATGTCTTGGGGAGTGATGTCGGGAGATTTGGGGTGGGGATCGAGTACTGTGGTTGTTGAAGAAGTTGGTTGGAGGAAGGGTCCTTGGACTGCTGAAGAGG ACAAGTTGCTTATCGACTATGTCAAGTTGCATGGCGAAGGCCGCTGGAACTCTGTTTCTAGGCTTGCTGGATTGAAGAGGAATGGGAAGAGTTGCAGATT GAGGTGGGTTAACTACTTGAGGCCTGACCTCAAAAGAGGCCAAATCACTCCCCAGGAAGAGACCATTATCGTTGAGTTGCATGCCAGATGGGGCAACCGG TGGTCCACGATTGCGAGGAGTTTGCCGGGGAGAACAAATAACGAAATAAAGAATTATTGGCGTACCCATTTCAAGAAAAAGACCAAACCTGCCCCTAGTG CAGCAGCAGCAGCCGACACATCGGACAAGGCCAGAAATCGTCTTCTCAAAAGGCAGCACTTCCATCAACAGCAAAAGGAACAGCAGCAGATAATGCAATC ACAAGAGCAGCAACAACACCAGCAGCTCCTGTGGCAACTCAACCAACTCGACATCAAAAAGATCATGTCTCTACTCCTCGACGACAACGAATATTCCGCC AATAATAATAATAATCACAATATGGCTCAGTTCAGCGGCAGGCAAGAAGTCGATCCTACCTCTGATGCCGCGACCAATAGCGAGAATAGTACTATTTATC CGAACCAGGAGCATCATGGAGGGTACTATGCCAACGGTATTTGCCCGTATTCGTCGTCGTCGCTAATGGCTCCGGCAGAGGCCAACCAAGAGATATTAAG CACCCCGTGGGTGGACGGGCTGTGGAGCTTGGAGCATCTGCATGCTGCTGGAAGAGCAGCTACTACTACTACTACTACCAGCAGCAGCATTTCAAATTTA GTTGCACCCTTTTGCTGA
AA sequence Show only first row Show all	>Lus10014453 pacid=23176853 polypeptide=Lus10014453 locus=Lus10014453.g ID=Lus10014453.BGIv1.0 annot-version=v1.0 MSWGVMSGDLGWGSSTVVVEEVGWRKGPWTAEEDKLLIDYVKLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEETIIVELHARWGNR WSTIARSLPGRTNNEIKNYWRTHFKKKTKPAPSAAAAADTSDKARNRLLKRQHFHQQQKEQQQIMQSQEQQQHQQLLWQLNQLDIKKIMSLLLDDNEYSA NNNNNHNMAQFSGRQEVDPTSDAATNSENSTIYPNQEHHGGYYANGICPYSSSSLMAPAEANQEILSTPWVDGLWSLEHLHAAGRAATTTTTTSSSISNL VAPFC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10014453 [exp]	0	1
AT2G24130			Leucine-rich receptor-like pro...		Lus10010772 [exp]	1.0	0.9195
AT1G28710			Nucleotide-diphospho-sugar tra...		Lus10032455 [exp]	8.1	0.7870
AT3G19200			unknown protein		Lus10014046 [exp]	8.2	0.8487
AT2G27550		ATC	centroradialis (.1)		Lus10019541 [exp]	9.9	0.8276
AT5G14230			unknown protein		Lus10036989 [exp]	17.0	0.8178
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10021674 [exp]	20.8	0.7300
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	27.6	0.7543
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	35.1	0.7905
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	37.7	0.8082
AT4G03230			S-locus lectin protein kinase ...		Lus10018512 [exp]	37.9	0.8243

Compare expression of checked genes

Lus10014453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.