Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 569 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 543 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 521 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 492 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28600 453 / 4e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 452 / 8e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 442 / 4e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 436 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 421 / 6e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 370 / 3e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032188 [exp] 897 / 0 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 583 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 556 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 546 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 540 / 0 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015349 [exp] 539 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 493 / 2e-171 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 494 / 1e-169 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 485 / 2e-168 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047950 [exp] 729 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 721 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 708 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 693 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 627 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 582 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 571 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 568 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 568 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 431 / 2e-149 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10014496 pacid=23170891 polypeptide=Lus10014496 locus=Lus10014496.g ID=Lus10014496.BGIv1.0 annot-version=v1.0 ATGATTAATTCAGCAAGTTTGAAGCACGGACTGGAGGAGAGCATAGGAAGTGGGAGAGGGTTTACCAGGATGAAGGCAGGGGATGCTTTTGCTCAGCTGG GATCGATAATCGCCAGTCTGATGTTCGTCTGGGCAATGTTTCAGCAGTACTTCCCTTACCAACTCCGCCACAACATAGAGAAGTACTCTCAAAGGGTCTT CTCCTTCGTCTACCCTTACATTCAGATCACTTTCAATGAATTCACAGGCGAGCGCCTGATGCGCAGCGAGCTCCACTCGGCCATCGAGAATTACCTCAGC TCCAATTCATCCATGCAGGCCAAGCGGCTCAAGGCTGACATACTGAAGAACAACCAGTCTCTGGTGTTGAGCATGGATGACCATGAAGAGGTTGCTGATG AATTCCAAGGGATTAAGATGTGGTGGGCTTCTGGGAAGAACATATCCAAGGCGCAGACGCTGTCTTTCTATCCCACTACTGATGAGAAAAGGTATTACAA GCTGACTTTTCACAAGCAGCATAGAAATCTTGTCATTGGACCGTATTTGAGCCATGTCTTGAAAGAAGGTAGAGCAATTAAGGTTAAGAATCGGCAGCGG AAGCTGTATACCAACAACGGATCACACTGGAGCCATGTAATGTTTGAGCATCCGGCGACGTTTGAAACATTGGGGATGGAGGCAGAGAAGAAGAAGGAGA TTCTTGAAGACTTGATCACGTTTAGCCAAGCGGAAGAGTTTTATGCGAGAATTGGAAGAGCTTGGAAGAGAGGTTACCTTCTCTATGGCCCTCCCGGCAC CGGGAAGTCAACGATGATCGCAGCCATAGCGAATCTTCTGAACTACGATATCTACGACCTTGAATTAACCGCCGTGAAGGATAACACTGAGCTGAGGAAG CTTCTGATCGAGACGTCCAGCAAATCCGTGGTTGTGATTGAGGATATCGATTGCTCTCTTGACCTTACCGGCCAGCGAAGGAAGACGAACGAGAAGGATG AAGCAACAGACGACAAAGATCAGAAGCCGAAGCAGCCGAAGGAAGATAGAGAGGCCAAACCAAGCCAGGTGACTCTTTCTGGACTGTTGAACTTCATCGA CGGGCTATGGTCGGCTTGCGGCGGAGAGAGATTGATCGTTTTCACCACGAATCATGTGGAGAAGCTGGATCCGGCTCTGATCAGGAAAGGGAGGATGGAT AAACACATCGAACTGTCGTACTGCAGCTTTGAAGCGTTCAGAGTGTTGGCGAAGAACTACCTCCTGCTTCACGACCACCAACTGTTCGACAAAATTCGCC AGTTACTGCTGGAGACGAAGATGACTCCAGCTGACGTAGCCGAGCATTTGATGCCCAAGACCGTGCCGCCGAATCCTGAGGCGTGCCTGAATAGTCTGGT GGAGAGCCTTGAAGCTGCGCAAGAGGAAGCGAGGGAAAAGAACAGCGAGAAAGAAATCTCTGCCATTGAAGAAACGAAAGAAGAAAACAAGGAAGCGCCT GGGAAAGACGAAAGCAAATACAAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10014496 pacid=23170891 polypeptide=Lus10014496 locus=Lus10014496.g ID=Lus10014496.BGIv1.0 annot-version=v1.0 MINSASLKHGLEESIGSGRGFTRMKAGDAFAQLGSIIASLMFVWAMFQQYFPYQLRHNIEKYSQRVFSFVYPYIQITFNEFTGERLMRSELHSAIENYLS SNSSMQAKRLKADILKNNQSLVLSMDDHEEVADEFQGIKMWWASGKNISKAQTLSFYPTTDEKRYYKLTFHKQHRNLVIGPYLSHVLKEGRAIKVKNRQR KLYTNNGSHWSHVMFEHPATFETLGMEAEKKKEILEDLITFSQAEEFYARIGRAWKRGYLLYGPPGTGKSTMIAAIANLLNYDIYDLELTAVKDNTELRK LLIETSSKSVVVIEDIDCSLDLTGQRRKTNEKDEATDDKDQKPKQPKEDREAKPSQVTLSGLLNFIDGLWSACGGERLIVFTTNHVEKLDPALIRKGRMD KHIELSYCSFEAFRVLAKNYLLLHDHQLFDKIRQLLLETKMTPADVAEHLMPKTVPPNPEACLNSLVESLEAAQEEAREKNSEKEISAIEETKEENKEAP GKDESKYKQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	0	1
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	2.0	0.9085
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	2.0	0.8824
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	8.9	0.8533
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	11.6	0.8799
AT4G02920			unknown protein		Lus10027996 [exp]	12.7	0.8352
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	14.1	0.8985
AT2G45360			Protein of unknown function (D...		Lus10032203 [exp]	15.2	0.8730
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031817 [exp]	15.9	0.8317
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	18.7	0.8161
AT1G10340			Ankyrin repeat family protein ...		Lus10037894 [exp]	21.0	0.8119

Compare expression of checked genes

Lus10014496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.