Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28580 453 / 7e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 443 / 1e-151 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT2G18193 304 / 8e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 299 / 2e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 296 / 1e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 286 / 1e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 284 / 8e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 280 / 6e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 274 / 2e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 265 / 3e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014496 [exp] 490 / 2e-170 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 473 / 2e-163 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 472 / 7e-163 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015354 [exp] 440 / 1e-150 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 426 / 1e-145 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 400 / 3e-135 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 400 / 6e-135 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 296 / 1e-94 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10025989 [exp] 276 / 3e-88 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020800 [exp] 480 / 5e-166 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 473 / 7e-164 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 468 / 9e-162 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 445 / 7e-153 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 445 / 7e-153 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 340 / 3e-111 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 336 / 3e-110 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 317 / 1e-104 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 321 / 5e-104 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.012G072300 [exp] 308 / 5e-102 AT3G28610 306 / 6e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10014497 pacid=23170869 polypeptide=Lus10014497 locus=Lus10014497.g ID=Lus10014497.BGIv1.0 annot-version=v1.0 ATGCTCGGCCAACTCAGCTCCTATCTTCCAACCCTGTTCTTCCTCAGCACAATGTTCCACAGAAACCTCCCTCGAGACTATCAGAACCTCATCGGAAAGT TCCTCCACAAATTCATGTCCTTCCTCTACCCTTACATCGAGGTCACCTTCCACGAATACTCCGACGACCACCATTACAGGCGCAACACCGCCTACACAGC CATTGAGAACTACCTGCGTTCAAAATCCATCCAGCAAGCCAGGAGCCTCAAAGCCGACTCTTACAGAGGCAACCACAAGCTCCTTCTCAGCATGGAGGAT CACCAGGAGGTCACCGATGATTACCAAGGTCTCAACCTACTCTGGTCCAAAGAAAGCACCGTCGCCAAATCCTATTTCAATGACAAGAAGAGATTCTACA AGCTTACGTTCAACAGGAAGCATAGAGAGTTCGTCACTGGGGATTACATAAAGCATGTGATAGAAGAAGGAAATGCCATCGAGCTTCGTAACAGACAGAG GAATCTTCATGCAAACGGCTCGAAAAAGACTCATGGCGGCAACGAAACAGCGTCGTGGAGCCACATTCCGTTCAACCATCCCGCGTCGTTCGAGACTCTG GCGATTGATCCGGGGAGGAAGAAGGAGATTATGGATGATTTGGTTGCTTTTACAAAGTCGGAGGAGTATTATGCAAGGATTGGAAAGGCTTGGAAGCGCG GGTACCTTCTTTATGGTCCGCCTGGGACTGGTAAAACCACCATGATTGCTGCTGTAGCCAACTTTCTGAATTACGACATCTATGATCTGGAGTTGACTGC TGTGAAGGATAATACAGAGTTGAGAAAGCTGCTCATTGAGATATGCAGTAAGGCAATTGTTGTTATAGAGGATATCGATTGTTCCCTTGATATTACAGAT CAAAGGAAGAAGAAGACAAAGGCGAAGACGAAAAAGAAGAAGAAGAAGAAGAGCAAAAGCAAGAAGAGGAAAAACAAGGACAGTAAAGAGGAGTCGGAAG ATGAAGACAGCGACAATGATGATGATGATGACGAGACAGAGCCGGAAGGTGAAGATGAAAGCAGCAGCAAGGTCACTCTGTCTGGGCTACTGAACATAAT TGATGGGATTTGGTTAGCAAGTGGAGGGGAAAGAATCATAATATTTACAACCAACCACGTTGAGAAGCTGGATGAGGCATTAATCAGGAGAGGAAGGATG GACAAGCATATTGAAATGTCTTACTGTCAGTTCGAAGGGTTCAAGGTGCTTGCCAGGAACTACCTCAGCATCGATTCACACCCGCTGTTTGAAGTCATTC GAAGCCTGTTGGAGAAGATCAAGATTAGCCCTGCTGATGTAGCTGAGAGCTTGATGCAAAAATCCATCGACGAAGATGCTGCGACTTGCTTGAATCGGTT GATTCAGGATCTGGAGACAGCAAAGGAGGGAGGCAGGGTCAAGGAAGAGGAAGATGACAATGACAACGAAGAACAAGAAGAAGATGAATGTGATGTCGGA TGA
AA sequence Show only first row Show all	>Lus10014497 pacid=23170869 polypeptide=Lus10014497 locus=Lus10014497.g ID=Lus10014497.BGIv1.0 annot-version=v1.0 MLGQLSSYLPTLFFLSTMFHRNLPRDYQNLIGKFLHKFMSFLYPYIEVTFHEYSDDHHYRRNTAYTAIENYLRSKSIQQARSLKADSYRGNHKLLLSMED HQEVTDDYQGLNLLWSKESTVAKSYFNDKKRFYKLTFNRKHREFVTGDYIKHVIEEGNAIELRNRQRNLHANGSKKTHGGNETASWSHIPFNHPASFETL AIDPGRKKEIMDDLVAFTKSEEYYARIGKAWKRGYLLYGPPGTGKTTMIAAVANFLNYDIYDLELTAVKDNTELRKLLIEICSKAIVVIEDIDCSLDITD QRKKKTKAKTKKKKKKKSKSKKRKNKDSKEESEDEDSDNDDDDDETEPEGEDESSSKVTLSGLLNIIDGIWLASGGERIIIFTTNHVEKLDEALIRRGRM DKHIEMSYCQFEGFKVLARNYLSIDSHPLFEVIRSLLEKIKISPADVAESLMQKSIDEDAATCLNRLIQDLETAKEGGRVKEEEDDNDNEEQEEDECDVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	4.9	0.9131
					Lus10007802 [exp]	5.5	0.9088
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	5.7	0.8342
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	6.2	0.9031
					Lus10023010 [exp]	6.9	0.8987
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	7.0	0.8891
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	10.2	0.8943
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	10.5	0.8115
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	10.6	0.8890
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	10.7	0.8923

Compare expression of checked genes

Lus10014497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.