Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 522 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 496 / 9e-173 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 471 / 1e-162 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 433 / 6e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28520 399 / 4e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 389 / 3e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 385 / 9e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 380 / 6e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 340 / 3e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 304 / 9e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015354 [exp] 548 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 491 / 1e-170 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 464 / 2e-160 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 457 / 4e-157 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 451 / 1e-154 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 445 / 3e-150 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 431 / 4e-147 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 407 / 8e-138 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015802 [exp] 273 / 4e-86 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091500 [exp] 551 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 542 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 536 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 536 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 489 / 6e-170 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 471 / 2e-162 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 470 / 4e-162 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 468 / 1e-161 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 467 / 2e-161 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 397 / 3e-136 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10014498 pacid=23170874 polypeptide=Lus10014498 locus=Lus10014498.g ID=Lus10014498.BGIv1.0 annot-version=v1.0 ATGGGCACATCAGAAAACACAACAATATGGGGCAGCATAGGGTCAGCAGCAGCCGCTCTAATGTTCTTCTACGCAATGTTCCAACAATACTTCCCTTACG AGCTCCGTGGCTACGCACACAGATACACCAGCAAACTCGTCGGACTGTTCTACCCCTACATCCAAATCACCTTCCACGAGCTCACCGGTGAGAAGCTCAA GCGCAGCGACGCCTACTTCGCCATCCAGAACTACCTCAGCAACCACACCACCGCCACCGCCAAGAGGCTCAAGGCCGACGTCGTCAAGGACAGCAAGTCC CTCGTCCTCACCATGGACGACCACGAACAAGTCGTCGACCAATTGGACGGTGGTGGTGATGGGGCCAGAGTGTGGTGGTCTTCCAGCAAGAATGTTCCCA AGACTCAGGGGTTTTCTTTCTATCCAAAAACTGAAGAGAGGAGATTTTACACCTTGACGTTTCATAAGAGGTACAGGGAGGTTGTTACCAAGTTGTATAT TCACAGGGTTTTGGAGGAAGGGAAGAACATTGCTGTTAGGAATAGGCAGAGGAAGCTCTTCACCAACAATCCTAGTGACAATTGGTACGATTACAAGTCG ACAAAGTGGAGCCATGTACAATTCGAGCACCCGGCTACTTTCGACACTCTGGCGATGGCATCAGACAAGAAGGAAGCCATCAGAAAGGACCTCATCAAGT TCAGCAAATCCAAAGACTACTACACCAAAATTGGGAAGCCATGGAAGCGTGGGTACCTCCTTTACGGTCCACCAGGAACTGGGAAGTCCACCATGATTGC TGCTATGGCTAACCTCTTGGATTATGACATCTACGACCTCGAGCTAACGACTGTCAAGGACAACTCTGAGCTGAGGAAGCTACTGATCGAAACCACCAGC AAGTCGATCATCATAATCGAAGACATCGACTGCTCGCTCAATCTCACAGATGACAAGAAGAAGGGCGATGATCCGGTTTCGAAGAAGAAAGACGAGGAAG AGAAGAAGAGCAAGAAGGGGAGCAAAGTGACATTATCAGGGCTTTTGAACTTCATAGACGGGATATGGTCGGGATGCGGAGGGGAGAGGGTGGTTGTTTT CACTACTAATTTCGTGGACAAGCTTGATCCTGCGTTGATCCGGACGGGAAGGATGGACAAACACATAGAGATGGGATACTGCTGTTTCGAAGCATTCAAA TTGCTGGCTAGGAACTATCTGGATGTTGAGGATGATAGAATGTTGTTTCCGAAGATCGCGGAGTTGTTGGATGAGGTGAAGATAACTCCTGCTGATGTTG CTGAGCATTTGATGCCTAAGAGTGAGGAGGAAGATGTGGAGTGTTGCTTGAGGAGGTTGGTTGGTGCTTTGGAGGATTTGAAGAAGAAGAGGCAGAAGAA GAAGAAGAAAAACAACAGCAACGGTGAGAGAGTGAAGGAATCGTCGTCGTCGGCGTCATCCTCATCTGAGGAAGAGGATGATGTATCAGAGAAAGGAAGG AAGAGGAATGGTAAATTATGA
AA sequence Show only first row Show all	>Lus10014498 pacid=23170874 polypeptide=Lus10014498 locus=Lus10014498.g ID=Lus10014498.BGIv1.0 annot-version=v1.0 MGTSENTTIWGSIGSAAAALMFFYAMFQQYFPYELRGYAHRYTSKLVGLFYPYIQITFHELTGEKLKRSDAYFAIQNYLSNHTTATAKRLKADVVKDSKS LVLTMDDHEQVVDQLDGGGDGARVWWSSSKNVPKTQGFSFYPKTEERRFYTLTFHKRYREVVTKLYIHRVLEEGKNIAVRNRQRKLFTNNPSDNWYDYKS TKWSHVQFEHPATFDTLAMASDKKEAIRKDLIKFSKSKDYYTKIGKPWKRGYLLYGPPGTGKSTMIAAMANLLDYDIYDLELTTVKDNSELRKLLIETTS KSIIIIEDIDCSLNLTDDKKKGDDPVSKKKDEEEKKSKKGSKVTLSGLLNFIDGIWSGCGGERVVVFTTNFVDKLDPALIRTGRMDKHIEMGYCCFEAFK LLARNYLDVEDDRMLFPKIAELLDEVKITPADVAEHLMPKSEEEDVECCLRRLVGALEDLKKKRQKKKKKNNSNGERVKESSSSASSSSEEEDDVSEKGR KRNGKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	0	1
AT2G18210			unknown protein		Lus10028324 [exp]	2.8	0.9762
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	3.5	0.9758
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	3.9	0.9750
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	6.3	0.9551
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	7.5	0.9457
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	8.1	0.9614
AT3G07310			Protein of unknown function (D...		Lus10003162 [exp]	8.5	0.9484
					Lus10026081 [exp]	9.0	0.9555
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	9.7	0.9620
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	11.0	0.9184

Compare expression of checked genes

Lus10014498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.